RNA id: XM_036974605.1


Basic Information

Item Value
RNA id XM_036974605.1
length 6654
RNA type mRNA
GC content 0.42
exon number 8
gene id LOC110520215
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54646623 ~ 54659681 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tgaacatagtcaaatcatagtgtgaaagcaggtgagctggttgtACTATTTTTGGCAATttgctggtgttttgtggtggcaAACTGAGCAGGTCGAGCGTAACATGTCAActctgttacccatagatagacaggctagaaatgtttgaaCAATTTAACACTTTTTGTGAAACTTTAAGATAAATAATTaaattgtcaaccctgttacggtcaaccctgctTCTTTATTTGCCACTTAAAGTGgaaatcagcagtagaaacaattaCAAAGCTGTTCCCCtcccctgttttggtaaaaagctgagggatggggctggagaactGTAACCACTCTGAAATATCAAAATGATCGTTTAAgtgtgttttgaggctatatGGCGTTTGTTAAAATGTACTTTGTTTACCAACATTGGAATAGAGcaagtttatatttttggttctgatggtgtatgacagttgaactaagttcatgaggcatttataagttatattcttcaagaatcaatggtaacatatcattcatttataagtccaaaaatggatgtagcaactgctgattgcccctttaacagtCACTTACTATAGTCATTTTTTTTAACCTCTTGAATTGGGTAAAGGggtttttatgaagttgaacatgtgttATTTATGAAAtaatgttaaaatgaggtgaaatcaaACCAAGTTACATTTCTCAAAATGCAGCAAATTGGTGGAACAACGCTATTATGAGCAGCATGATGGAACACAGATTTTTACATTGCACTCAAATCTGAACTATCAAGGCATGGACACATAAAACTGAAAGTTACTGTAGCTTCATGTTTATTGTCAGCAtgtataattattttatttatctttCTGTACAAGTGTAatctaaaaaaaacaacaacataaaaacaaaaaataaacataaagGCTGCAAATAAATTCAGTGCAGTTCCTTCCTATTTCTATAGCCCTATATGTTGTCTTATATTGCAGGTTTGTCATCACTATGTTCCACCATTCACTCTCTCTAGAAATGATTTAGTCATGCTTCTAGGGGGGATTAAATCACTTGCTTATCATCACGTAATTACTGTCAATTTAAATGTAAACATCTCCAATGTTATACATGCTCTGGGTCAGCAAGGGTTTACAATAGGTTCAATATTCTGGACAGTCAAGGGTTAACACTGAGGCCCCAGCATGCATATGGCTATTTGGACAATCTGGGCACACTTCCGGTAATACCGTGAGAGGGACCTGGCAACTTTGCTTACGTGGAATTTTAAGCTGAGAGAGAAACACATATGGCTTTACAAGCTCCATTGCATTTTGGAAGtatctctcctccttccatgtAATGATTGACCGATCCTAGTGAAGGAGTAGatcagtctctgtgtctgtgtctctgctgaGTCACTGCAAGCTGGAAGGAGCACTAAGCTAGCGGAGCAGACGACAGCAGAGCACCATGACCTGCCGGATGTTTGAGGAGAAACACCATGCCGCCATCTACCAGAGGTACCGCTTTGTACCCCCAGAGGAGATCAGATACATCATCCTGCATTACCTGGAAAGGAAGAAAGTCCAGCCTCATGCCCTAGCTGTGGACCTGGGCTGTGGGACGGGGCAGAACTCACGCCTGATGGCCCCACACTTCCAGGAGGTGGTGGGCATTGACATCAGCGAGTGCCAACTGGAGGAGGCCAGGGCAGTGGCAGGGTTCAACAACATCACCTACAGGAAAGGGACAGCTGAGGAGCTGCCGTTTCCGGATGCTTCTGTGGACCTACTGACTGCAGCCTCAGCGGCCCATTGGTTTGACCAGCAGCGGTTCCTCTTGGAGGCAGTCCGGGTCCTGAAGCCTTGCGGCTGCATGGCTCTGCTTGGCTTTGCTGATAACTTCAGACTCCATTACGGCTCATGTGGGGACAGACTCACTGACATCTGTGATGAGTTCAAGAAGGTGCTGTTACCATACACCAGCACACAGGTAGCAGTGGCCAACATCAAACTACAAGAGCTTTACACTGCTATCCCCTTCCCTGACAAAGAGAGGGTTGAGTGTATCCCACTGAAGCAGCAGATCTCAGTGAGGAACATAGTGGGCTTCATGGAGTCCTTCTCCATGTACCAGGCCTTCCAGAGGGCCGagcctgatgctgccaccgcaCTGCTGCAGAGAACACTCGACAGGTTTCTGAAGGAGATGGGAGTCACATCACCAGACACACTCATGGAAGTGACGCTGGAGTATTTCTGTGTCCTGGCGTCTAAACCGGAGTGAACACTCTTtacagtgtgaatgtgtgtgtgtagacagatGTTTCTTAAGCTTGTGTCAATCATGTTTAAGCTGTTGTTAAGTAGTATTCTGTTCACATAAGGTGTCATTGAAGTCCCTTTGGTTGTCTCTTTTATACATTGTAATGTAGAGCAAACTATTAGCCTTAGTCACATCATTATCAAAATGCTTGCCACATTTAGTATCTTCCCTGCCTGAGATTGACAATAAAATGTGTCTGCAGACACAATCATAACTTTTGAATATTATTTCACTTCAGGGCCgtatcaagtgtctcagagtaataTTAGGAGTGTGGATTTTAGGATCAGTTTttccttttagatcacaatgaaaaATATAACATGGACAAGGGGGTATCTGATCCAAGATTAGCACTCCTAATCTGAGACAATTGATACTTacgcagcccaattctgatatttttaactaattggtcttttgatcgATCAGATCAggtctgaaaaagatctgatgtgaaaagatctgattggTAAAAATATCAGAATCGGGCTGCCTGTCGAAACACAGCCATACTGCCCCAGATATTCTGATGGTTTCTTTTTAATATGCTGTATGCATGGGATCAACCCAATTCATCACGTTACGCAAACTAAGAGGAGACCTTTGGTCGGTTCTTGGACCAGTCCTTCAGATATTGTTTATAATTAACTCTTTCAGTGATCTAGTACAGCTCAGTACAAAGCCtgttgttgttgatctattgCTCAGTGATCAGTTGGAATAGGGTTTTATCTGAGTAAAAAGACTGAACTCAGGCTTTTGTATTTTCCCACATCAATCACAACAAGGAAAGCACTTCATAGCAAAGTAAGTTcctgatccctccctctcccgtccCATCTCCATGGGACTTCTTATTGGTTCTGACACACCACACAGCTCTTTGACCCCATGTAACCCTGGCTCCCTTCATAAACAGCCTCATTCGCAAACACACATTCCCATGAAGCTGCTGCTCCgccccttcctctctatctgggGCCTGTCTCATACTAGCCTGGCCAAGCACCTAATGGTTTCCCTGTAACTGGCCCTCTGAAGAAAGGGAATCTCCTGCGATGAgtgaagtagtgtgtgtgtgatcacaTTCCTTAACGTAGCCTCCACAACCCAGTGAGAAAGAGAGCTTGCATGAGTTTTATTAAAATCCGTAAGAGAAACAGGTCTCTTTCTGGGCTGGAGAATACCTTTTGTATTCCTGTTTTCTCCTGTAGTATAGCTCAGTGGCATGGCATGGCCCATCATCTGTTTGAAGGTAAGGAGCATGCTGCCTCCTACTGGAAATACAGAGTCTCAGCTCATTGAAGAGGTCATGTTCTTCCTGAAGAGAACGGTAGGAGTGACATACCTGTTACATTTTCAGACTTGGTTTTCCTAAATCAAATACCATGGATTGTGCATGCTCAGATGAAATGGTTACAGTCTTCTGTGGATGTAAAATAGTTACAATGGAAAATATTGCGAAACATGACAGAATTATATCAATGTTTAGTTCCAGCTTTTAACGTTCTTGTAACAGATAAAGATGGTCTATTTACATTCTAATGCCTTTAAAAATGTGTGCATGTACTAACAATGTCTCATACCTGTGTGATGGGGATGTGTCCTATTTGACAGAGGGGCATGCAGCCCTTTGACCTGGCAGTAGATGTGCCCTGACCCACAGCCTACCTTGCCTCCTCCTCGGTGTTGGGGACCGACGTGAGCCCTGACCAGCAGGAGGTGGCCCTAGAGCATGCAACTGCCCCTAACGTCTCTTACAGGTCAGAGCCTCCGCCCCTAACATCTCTTACAGGTCAGAGCCAACcccagaggggagaggaggaaggtgcaCTGGACTGGAGGGTCATGTTTTGTTTTGAGTAACACTAACGTGGACTTTAACCCTTTACATTACAGTCAAAGAATTAGTTTTTTATAAGTAGGCCTACTAGACTTGTAGGTACAAAATAATTTTATTCAGGGTGAAATTGACATGGATTTACCAATACCGTCTCACTCAGAACAGTCTTGCCTTATGTAACAGTACCACAATGTCATGGGAGAGAGGACTGTAGGGTTAAAGTCTTTTGTTGATGTGGATACAGTGAAAATAGGCCAAGGGCCAAACCGGACAATGGGACCCTTGTCTGCTCAAACTTTTGCACGTCTTCCTGTAATGAGCAAACATAAAAGCTATTCTGGAACAGTGCCATCTGAACTACATCTCAGGAACGAAACCACAAAGTTGTGAGCAAATTCTAGCCTGGTTCCCATCGGTTCTTGCTGTTTTGCCATTTCCTGTAGTGGAGGTGACAAGTTACTTGAAATTAGCAGCCCAGTTGTCATAGTAGATCTTTTAACCTCTCCTTTATGTGACTACTAACATTAGCCTCCTCTATCCATGTAATGATTAAAAGGTCCTAGTGAAGGAgcaggtctgtctctgtctgctgaGTCACTGCAAGCTGGAAGGAGCACTAGGCTAGCGGAGCAGACAGCAGAGCACCATGACCTACCGGCTGTTTGAGGAGAAACACCATGCCTCCATCTACCAGAGGTACCGCTTTGTACCCCCAGAGGAGATCAGAGACATCATCCTGCATTACCTGGAAAGGAAGAAAGTCCAGCCTCATGCCCTAGCTGTAGACCTGGGCTGTGGAAGAACTCACGCCTGATGGCCCCACACTTCCAGGAAGTGGTAGGCATCGACATTAGCGAGTGCCAACTGGAGGAGGCCAGGGCAGTGGCAGGATTCAACAACATCACCTACAGGTgtttgaacgtgtgtgtgtggggtctaaCTTTACTATCCTGTTGAGGTccaaaagtcctcacaaggatagtaaaacaatgaAAGTGGGGATATTTTGCCGATCCTATTTTAGGCTTAGAGGTTAGGttttgggtaagggttaggagttaggggtagaCTTAGGTTtagttaggggtttggggttaggcttaaggttaggcgttcgggaaaataggattttgaacgGGAATAAGAGATGTTGTCCCCACCTGGATAGTAAAACCAACGTGTATGCTGTTTAAAGATAAGTGATGACAATCTGCAGAGACAAAgttatttctgaagattattaataatttcatgtgattagtggtTCATTTGCGTCTGTCCTTCATTTTAAAGTCAACCCTTTTACGTGAACTAAAATGGTGAaagtataatatatattttttcttcttggcattctctcaacaaaaaacattgaacatagtcaaatcatagtgtgaaagcaggtgagctggttgtGCTATTTTTGGCAATttgctggtgttttgtggtggtaaACTGAGCAGGTCGAGCGTAACATGTCAACTCTGTTACCCAttgatagacaggctagaaatatTTGAACAATTTAACACTTTTTGTGAAACTTTAAGGTAAATAATAaaattgtcaaccctgttacagtcaaccctgctTCTTTATTTGCCACTTAAAGTGgaaatcagcagtagaaacaattaCAAAGCTGTTCCCACccctgtttcggtaaaaagctgagggatggggctggagaactGTAACCACTCTGAAATATCAAAATGATCGTTTAActgtgttttgaggctatatGGCGTTTGTTAAAATGTACTTTGTTTACCAACATTGGAATAGAGcaagtttatatttttggttctgatggtgtatgacagttgaactaagttcATGAGGCATTtgcaagttatattcttcaagaatcaatggtaaCATATCATTCCAaaaaagtccaaaaatggatgtagcaactgctgattgcccctttaacagtCACTTACTATAGTCATTTTTTTTAACCTCTTGAATTGGGTAAAGGgatttttatgaagttgaacatgtgttATTTATGAAataatgttaaaattaggtgaaatcaCACCAAGTTACATTTCTCAAAATGCAGCAAATTGGTGGAACAACGCTATTATGAGCAGCATGATGGAACACAGATTTTTACATTGCACTCAAATCTGAACTATCAAGGCATGGACACATAAAACTGAAAGTTACTgtaactgtcacgacttctgccgaagtcggttcctctccttgtttgggcgccgttcgacgtcaccggtcttctagccatcgctgacccacctttcatttttccatttgtttcCCATGTCTGGGTGCGGTTGGTTTtgcatattaaactgctccggttattacccagttctgctctcctgcgcctgtcACCCCAGCAGTCAGTCAAGCACCTCTAACAGTAGCTTCATGCTTTTTGTCAGCATTTATAATTATTTTCTTTATCTTTCTGTACAAGTGTATGTAATGAAAAATAATCgaacaaaaaataaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311571 lncRNA downstream 39251 54607167 ~ 54607372 (-) True G274412
TU311333 lncRNA downstream 328837 54315329 ~ 54317786 (-) True G274208
TU311321 lncRNA downstream 357352 54281582 ~ 54289271 (-) True G274198
TU311243 lncRNA downstream 417446 54174850 ~ 54229177 (-) True G274126
TU311488 lncRNA upstream 9681 54669362 ~ 54678112 (-) True G274339
TU311690 lncRNA upstream 149138 54808819 ~ 54809081 (-) True G274531
TU311695 lncRNA upstream 154621 54814302 ~ 54814543 (-) True G274536
TU311697 lncRNA upstream 159587 54819268 ~ 54819476 (-) True G274538
TU311711 lncRNA upstream 170924 54830605 ~ 54831374 (-) True G274552
XM_021597375.2 mRNA downstream 281 54639230 ~ 54646342 (-) True LOC110520214
XR_002472959.2 mRNA downstream 10145 54633738 ~ 54636478 (-) True LOC110520218
XM_021597379.2 mRNA downstream 22079 54617528 ~ 54624544 (-) True LOC110520216
XM_036974604.1 mRNA downstream 52543 54504064 ~ 54594080 (-) True LOC110520213
XR_002472958.2 mRNA downstream 217409 54425558 ~ 54429214 (-) True LOC110520212
XM_021597393.2 mRNA upstream 387837 55047518 ~ 55050859 (-) True LOC110520226
XR_005049721.1 mRNA upstream 412112 55071793 ~ 55122008 (-) False LOC110520227
XM_036974620.1 mRNA upstream 412170 55071851 ~ 55122008 (-) False LOC110520227
XR_005049715.1 mRNA upstream 413812 55073493 ~ 55122013 (-) False LOC110520227
XM_021597395.2 mRNA upstream 471713 55131394 ~ 55146386 (-) False idh1
TU309646 other downstream 1395539 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 1937807 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 3046393 51597935 ~ 51600230 (-) True il1rl1
TU307458 other downstream 3046725 51597399 ~ 51599898 (-) False il1rl1
TU307414 other downstream 3172484 51473324 ~ 51474139 (-) True fgf9
TU311493 other upstream 20237 54679918 ~ 54682805 (-) True G274344
TU312299 other upstream 443813 55103494 ~ 55119212 (-) True LOC110520227
TU312498 other upstream 750462 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 750462 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 2611101 57270782 ~ 57297762 (-) True si:dkey-91i10.3

Expression Profile