RNA id: XM_036974610.1


Basic Information

Item Value
RNA id XM_036974610.1
length 2099
RNA type mRNA
GC content 0.45
exon number 10
gene id LOC110520222
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54673232 ~ 54689498 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAGTCATTTCCTGAACCTATTTATCAGAGATGTCAGTAATGATATGAGTTGGCTACTGAGTAGATAcgggaacagaacagtaacataCAGCAACATGGGGCAGTACAGTGGCTCTATGGGTGTAACGTTGTTGTGGGTTCTGCTGTGGATATCTAGATCCGGTCAGGGACTCTCAGCTGAACAATTGTCAACGAAGATATTTTTCCTTGCCGAGACCAATACCAGTAACAGAGTCACTCTCCAAGTTCCCCCTGCAGTTCTGAAAGGGACAGCACACCAATGGATGTGGACCTCACATGATGGCAGACACTCAAACACTTCAGTAGCCCAAATCACTTCCTCCATGAGTAGAAATCCTTCATGGAACACACAGGCTCCTTTCTCACAAGGAACAGGATATCTGTCTATGCAAACAAAATATGAAAATGCTGGAGAGTTTGTGCTCATGCAAACCAAACCAGCTTCAGCAGTTCTGGCGAGATTTGAGGTGTTTAGTTTTGTGGTTAAAGCGACACCAAACTATAACGGTAATGAAGTGTATCTGGGTTCTGATGTGAGTGTGCGTTGCGAGGTGTCCCACATACCAGATGGGGCCACACTGCAGTGGGAAATAGATGGAGATTCCACATCTAACACCACGCTGTTCTACAACAAAACGGCCCATATGATCATCCACACTGTCGATCAGAATTACCAGGGGAGATCTAACTGCAATTTCAGACTGAATGGAGAATTGTTGTTTAGAGATTATACTACACTGTCTGTACAAACAGGCACATTTAATAACCCATTGATACATCTGTTTCGAGAGAGCAGCAACAGCAGTGAGGTGAAGTTGATCTGCAGGTCAAGGTCCTCATACAGCAGAGCCAAATGGATCATGAGCAGATCACCAACATCTGTTACTCTGACTTCATCAGACAAAGTCAGAAGTGACCGATTCTCATCTCCCTCATTCAACGGATATGATTTCCCACTGCATGTCTCACCAGTGACATTTGAGGATAGTGGAGTTTTCACATGTTTATTTGAAGACCAGAGGTTCAGCTCGGTTAAAATCACAACCATTCGAGTATCTGAATCTGGAGGGCCCCCTGGTGGCCAGCCCGTGGTGGTGAGGTGTGAGGTGTCGGAGGTGAGCACCGACCCTGTGACCCTGGCCTGGATGAGGATGGAGGGGAGCAGGTGGCTGCTGGTCAAACaggacatcctgacagagagtcACCCCACCAGGACGCTCAGTGTGACCCTGCCCAGCCTCCGTAGCGACCAGCTGCACTGGCAGTGTGCTGTGTTCACAGAGGGCATGCTCAGAGCGACAGCCTCCCTGACCCTCACACTCCCCACACAGACAACAATGTCATCAATGACAGATGACCATCTGTGGACTGTGGCCATTGTGGCCTGCATTGCTATGGTTGTTGCTGGGGTCCTGGTTGGTGCTCTGGTGTTCTACCTGAAGAGGAAGAAGACAGCTGTGACGAACCTACCGCTGACCCAGAAGAATGACCCAGTCTACGATAACGCCACAGATCCACGAAGAGACCAAGAGAGCCAGAAGGGTCAAACAGGGGAAGATGAGAATGAGGAAGTTCATTACTCTGAATTTGCTTTGGGTGAACCCAGGCTTGGtgATACCAACAGAGTCACAGCAAGGTCAAATCAGGAAAGTGCTGTGATCTATTCAACTCTCAACATATAAGGACAATTACCCATGTTAAGTTTCAGGGATTGTGTTCCACATTTTGACAATGACTTAATGTGTATTAGTCTACAGAGAAAATTAAACCACAATACTGATTGCTTTTAAAATTATGCTATATGCCAGTTACCTTTCATTTTAAGCCTATGAGATTTGTTCAATTAGTTTATTATACTGCTTTTGATTCGTGCATTTAATGATACAGTAATGTATGCTTACTAAGACTGCTGTGTAAATACAGCAGCTAGCCCAATTGGAGGGTTTACATTTTGGTCTGAAATATTGATGGCTGTAACCTACAAATAATAGTTGTATATATTTGTAGTCTTTCATGCATGTGCATTTTGTATGTTTCATTCGATatgtttaaataaaaatgtttttcgTCATTTGATGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU311143 lncRNA upstream 12987 54647602 ~ 54660246 (+) True G274057
TU311142 lncRNA upstream 13546 54645513 ~ 54659687 (+) False G274056
TU311137 lncRNA upstream 13546 54645924 ~ 54659687 (+) False G274056
TU311138 lncRNA upstream 16904 54645513 ~ 54656329 (+) False G274056
TU311608 lncRNA downstream 37299 54726797 ~ 54727010 (+) True G274449
TU311617 lncRNA downstream 43871 54733369 ~ 54733684 (+) True G274458
TU311618 lncRNA downstream 44800 54734298 ~ 54788327 (+) True G274459
TU311684 lncRNA downstream 107780 54797278 ~ 54797495 (+) True G274525
TU311742 lncRNA downstream 175099 54864597 ~ 54865143 (+) True G274583
XM_021597380.2 mRNA upstream 834 54668850 ~ 54672399 (+) True LOC110520220
XM_021597373.2 mRNA upstream 235872 54365929 ~ 54437361 (+) True LOC110520210
XM_021597369.2 mRNA upstream 307836 54318683 ~ 54365397 (+) False LOC110520209
XM_021597385.2 mRNA downstream 170022 54859520 ~ 54931543 (+) True LOC110520223
XM_036974613.1 mRNA downstream 303946 54993444 ~ 55001733 (+) False creb1b
XR_005049680.1 mRNA downstream 303946 54993444 ~ 55001733 (+) False creb1b
XM_036974612.1 mRNA downstream 303947 54993445 ~ 55001733 (+) False creb1b
XM_021597386.2 mRNA downstream 303957 54993455 ~ 55001733 (+) True creb1b
TU310076 other upstream 831616 53841264 ~ 53841617 (+) True G273094
TU309978 other upstream 1014550 53657461 ~ 53658683 (+) True G273004
TU309921 other upstream 1020802 53648825 ~ 53652431 (+) False G272965
TU309923 other upstream 1021081 53648825 ~ 53652152 (+) True G272965
TU309244 other upstream 1336707 53291330 ~ 53336526 (+) False LOC110520190
TU311754 other downstream 184901 54874399 ~ 54875115 (+) False G274592
TU312073 other downstream 685048 55374546 ~ 55375009 (+) False LOC110520231
TU312074 other downstream 685048 55374546 ~ 55375526 (+) True LOC110520231
TU312821 other downstream 1210696 55900194 ~ 55900743 (+) True G275542
TU312833 other downstream 1225831 55915329 ~ 55916133 (+) False G275553

Expression Profile