RNA id: TU309923


Basic Information

Item Value
RNA id TU309923
length 3303
RNA type TUCP
GC content 0.36
exon number 2
gene id G272965
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53648825 ~ 53652431 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTACAAAGTATGTCATTGCTCTTTAAGACATTGCCCCTTTAAGAACTGTTACGCAGCTGCATCTAAGACAACTTATGCTTGATCTGAAAATGCTAaaaataacactatccataagttaaacattgatggtgttattacagatgaccAAAAATGAATCGCTAATTACTGTAGCAATTTTTACAGAAAATGTTATAGCTCTACATATTGTCAGGAATCCACAAATGTGTTTTTTAACTCACTGAATAATTTTCACTCTATCAGTGATATagaatctaaacagtgtgatgaacccatcaaagttgaagagattatagagtatcaaacatctaaagaacaataaatcaccaggtgttgatggaattacatcagaattttacaaattattttctgaacaagtTCCTATTTGAAGTCTTAGAGAGTATTGaaaacaatgttctccctccctcaatgagtcaggggttaataacactgatacctaagcctaaaaaataagtgctgctcatcgataactggCGTTCAATCtgtcttcttaataatgactataagatattagccttactacttgcaaaaataattaaagaagtcctggatgcaatcattgatgaaacacagtctggctttgtgaggaacagacatatttctaacaatgtcagactagtattagacgtacttgactactcagacctaataactgaggatagcttcatattatttttagatttttataaagcatttgacacagtagagcatcagtttctcttccactcccttgagagacttggctttggggattttctgtaaggctattaagactctctatgcaaataacagctctatcaaattgaaatatggcacctcacctagatttgagttaaagagaggaattaggcaaggttgtcctatctctccgtacctgtttttattaatcaccccaaactttttataatagtcctgtacaaggtatttccatagctggtaaagaaattattataagccagttggctgatgatactacactttttctgaaagacgctaaccaaattcccatatcgatcaatgtgatacaatccttttccaaagcgtctggtctatatcttaacattaataaatgtgaactcatgTCAAAGAttgtgacaccttcatattatggtattccagtaaaataagaacttacatatttaggcataaccattacaaaggatcagaagtctagaggcttactaaatttgaaccctcttattaaaaaaacaGAAGAAGCTAATTATTAAAAAAACAGAAGTAGCTAAATCAATGGCTAGagagggacttatctttaaaaggtagagtcctaataaccaaggctgaaggtatctctagactaacatatgatgctctatctttatatctggacagtaaaataagcaaggagatagacaagatgcttttcaactttctttggagaaaccgtacccattacattaggaaaactgttgtaatgaacacttatgagaatggtggactgaattttctggactttactactttaaataatacttttaagatcaattggataaaacaattcctaagaagacccacttctatctggaatgttcttcctcatcatgtcttctctacttttggtggccttaacttcatgttgttttgcaattataatattgacaaagttccactgaaactttctgcttttcatcggcaggttttcttgtcatggtccttaatatataaacacaattttctccacacagatataaTATATAAaaggcaaattaattacttaaaaatcatacaatgtgattttctggatttttgttttagattctgtctctcacagttgaagtgtacctatgatataaattacagacctctacatgctttgtaagtagtaaaacctgcaaaatcgtcagtgtatcaaatacttgttctccccactgtatgtccccTCTTGAtactccccatcccggatctggaagcgtaatcatcgactgacactaattagcataacgcaacggacataaatgttactagaaaatattcctattcatgaaaatcacaagtgaaatatattaagacacagcttagccttttgttaatcaccctgtcatctcataatttcaaaatatgctttacagccaaagcaagacaagcatttgtttaagtttatcgatagcctagcgtagcattatgtccagctagcagcaggtaacttggtcacgaaaatcagaaaagcaatcaaattaaattgtttacctttgatgagcttcggatgttttcactcacgagactcccagttagatagccaatgttccttttttccaaaaatattatttttgtaggcgaaatagctccgtttgttcttcacgtttggctgagaaatcgaccggaaattgcagtcacaaaaacgctgaaaaatattccaaattagctgcataatattgacagaaacatggcaaacgttgtttagaatcaatcctcaaggtgtttttcaaatatctattcgataatatatccaccgggacaattggtttttcagtaggaccgattggaaaaatggctacctctgtattttacgcgagaatcactctgagagccatcaggtgacaaTGTAGCTGCTTACGGGTaatcttcaacataaatgcgtaaaactacgtcacaatgctgtagacaccttggggaatacgtagaaaaggtaatctggttgataacccattcactgctcaatagggacgcattggaacgcagagctttcaaatcatgaggcacttccggattggatttttctcaggctgtcgcctgcaatatcagttctgttatactcacagacaatatttttacagttttggaaactttagagtgtgttctatcctaagctgtcaattgtatgcatattctagtatcttgtcctgacaaaatatcccgtttactttgggtaagttatttttccaaaaatgaaaatactgccccctagtcacaacaggatATTATaattaaggtccttgtgtaattgtaatgtgatattgtaccccctagctcgattgtccattgtTTGTCATCTATGTATGCTcgtgttccctcatgtgctttatgtattgatttgttgttaataaaaaaataaaaaaatctgaaaatgtaGTCGGAGGCGCCGTAAGGAGTGTGTGACGCAATTGTTGAGCCTCCAGAGTTATGCCGAGGTCAAATTGAACTTTGTACTTCATCGCCGTGCTCCACCCAAATGTATCAATGCGGAAAGCTccttatagctccacattgatatgattggttgacggtaggtggggcgggaggtc

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309963 lncRNA upstream 51205 53597339 ~ 53597620 (+) True G272989
TU309962 lncRNA upstream 51547 53597024 ~ 53597278 (+) True G272988
TU309958 lncRNA upstream 58960 53589665 ~ 53589865 (+) True G272984
TU309956 lncRNA upstream 61894 53586652 ~ 53586931 (+) True G272982
TU309811 lncRNA upstream 170255 53423870 ~ 53478570 (+) True G272867
TU309979 lncRNA downstream 9838 53661990 ~ 53664217 (+) True G273005
TU309930 lncRNA downstream 15553 53667705 ~ 53673619 (+) False G272966
TU309932 lncRNA downstream 21740 53673892 ~ 53674498 (+) True G272966
TU309995 lncRNA downstream 50630 53702782 ~ 53705181 (+) True G273016
TU309998 lncRNA downstream 54270 53706422 ~ 53706886 (+) True G273019
XM_021597347.2 mRNA upstream 2400 53631774 ~ 53646425 (+) False parp14rs3
XM_021597348.2 mRNA upstream 2400 53631774 ~ 53646425 (+) True parp14rs3
XM_036974577.1 mRNA upstream 4716 53631769 ~ 53644109 (+) False parp14rs3
XM_021597345.2 mRNA upstream 19540 53600172 ~ 53629285 (+) True LOC110520196
XM_021597343.2 mRNA upstream 198943 53436028 ~ 53449882 (+) True LOC110520194
XM_021597350.2 mRNA downstream 213316 53865468 ~ 53869538 (+) False LOC110520200
XM_021597351.2 mRNA downstream 213417 53865569 ~ 53869538 (+) True LOC110520200
XM_021597352.2 mRNA downstream 218598 53870750 ~ 53883922 (+) False LOC110520202
XM_021597353.2 mRNA downstream 218598 53870750 ~ 53883922 (+) True LOC110520202
XM_036974583.1 mRNA downstream 252158 53904310 ~ 53990481 (+) False LOC110520204
TU309244 other upstream 312299 53291330 ~ 53336526 (+) False LOC110520190
TU309190 other upstream 425560 53221427 ~ 53223265 (+) True LOC110520187
TU308945 other upstream 476397 53166952 ~ 53172428 (+) True acvr2aa
TU307177 other upstream 2070142 51573980 ~ 51578683 (+) False LOC110520169
TU305958 other upstream 2748548 50898589 ~ 50900277 (+) True G269291
TU309978 other downstream 5309 53657461 ~ 53658683 (+) True G273004
TU310076 other downstream 189112 53841264 ~ 53841617 (+) True G273094
TU311754 other downstream 1222247 54874399 ~ 54875115 (+) False G274592
TU312073 other downstream 1722394 55374546 ~ 55375009 (+) False LOC110520231
TU312074 other downstream 1722394 55374546 ~ 55375526 (+) True LOC110520231

Expression Profile