RNA id: XM_036974583.1


Basic Information

Item Value
RNA id XM_036974583.1
length 1964
RNA type mRNA
GC content 0.48
exon number 8
gene id LOC110520204
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53904310 ~ 53990481 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TCTTATGTCTAGCAAATGCATGTGCTGATAATCAGATCTCTCTTACACAAGTGAAACAAAACCTTAATTTAGGAATCTGCTCACGTCAGTTGAGAGGGAGGGGTTTGGGGTCTGTTGCTGCTGATGCTGTGGTGTGGATATTGCGTTTATCTTTCTTCTAGTCATCGCCGCCTTCACTTCGTGCTTGTCAACACCGGCGGCATTCGCGCCCTAGATGGCTGCATTTGGCAGTCCTTTGTGAGATTATTTTCCCGAGGATTTTTGACCTATAAGTAAACCATGACTGACCCAACGACACAAGATTCCTTCCCCGTCCCGGATCCCACAATCGTGGATCCTTCAGCTGTAAGAAACGGCGGATGCGCTCCGGAGGCGAACCTATCCAAAAGACCGAGTCAGGGCGATCCTTTCAGTATGGACCGGGACCAAGAGATGAAAATCACGGACAGTGTTGAGGGACAAGGTAGCCTGCTGGAAAGCAGCATGCGACTAAAGCCCCATGAGGCTCAAAACTACAGGAAGAAGGCATTGTGGGTATCTTGGATCTCCATCGTGGTGACACTCATCCTGGCAGTGGCAGCCTTCActGTTTCGTTCATGAGACACAGCGCATCAGCATTTGGATTTGCTTTTGACGCCACGTTGGACGTGCTATCTTCAATTATCGTGCTGTGGCGCTATAGCAATGCCGCAGCTGTCCACTCCGCCCATAGGGAGTACATAGCGTGCGTGGTCCTTGGGGTGGTCTTCATCTTGTCCTCCCTGTGTATTCTAGGAAAAGCAATCCATGACCTGGCCACCAAGCTGCTTCCAGAAGTGgatgACTTCCTCTTCAGTGTGTCTATTGTCAGTGGGATTGTATGTATCATCCTGGCTGTGTTCAAGTTCCTGCTGGGGAGAGTGCTGACCAGTAGAGCCCTCATCACTGACGCTTTTAACTCCATGGTGGGGGGCATCATGGGTTTCTCCATCCTCATCAGTGCTGAGGTGTTCAGACACCACCCTGACGTCTGGTACCTGGACGGATCCATCGGCGTCATCATCGGACTCATCATCCTCGCTTACGGTGTCAAACTGCTCCTGGACATGGTACCCCGGGTGAGACAAACCAGGAACTACGAACGCTTTGAGTGAACGCTCCTAGGACCAGGTTTACACCTgatgcaccccttccccttcccctcccctcctctctttctatctcacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaggccctagCCTGGAGAGACTCTGAGGGCAAAATAGTTAAAGACATTATGATGTTGTTGGCGTGTTGGCCAACCTCTCAATCAAGGTTTTCCCACCTAGCCACCCCCTTCTAACTATTTGTCTTTACCTCCTGTCCATCATTATTACTATCCAGAAAGAGGGAATGAAGAGGTGAGAAAAAGGATTACGAAGAGGCTGGCATTAACGGCTGGTCCAGAGAGATCAGCATTTGTTTGCCATGTGTATCTGAACCCACTGCTGTTGCTAAGCGACCTAGAACCCCTGGCATTTTGAGAGGCACAAGATCCCTTTCATATTGCCCAAACCTTTTTTATGTTCCAACCCTGATTAGTATGGGGGGAGGGTTCACAGGAGAACACCTGTTGTAGACCATCCACATAAACTTCTGTGACTTTCAAAATCCCTATGCATTGTTAGAATCTGAATCATTTATAATGGTGGAATCATGCCACTACTTTCTGCCCTGGTCTGTTTTCACAGATCTCTATGGTTCTGTGTGTGAGTCTCCATTGCTCTTTGAGATTagaagctacagttgaagtctacatagtttacatacacttaggttggagtcattaaaactcgtttttcaaccactccacaaatttcttgttaacaaactataattttggcaaatcggtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310104 lncRNA upstream 38887 53865155 ~ 53865423 (+) True G273119
TU310095 lncRNA upstream 44338 53857406 ~ 53859972 (+) True G273113
TU310075 lncRNA upstream 85773 53817120 ~ 53818537 (+) True G273093
TU310037 lncRNA upstream 147528 53756576 ~ 53756782 (+) True G273056
TU310019 lncRNA upstream 173049 53730078 ~ 53731261 (+) True G273039
TU310251 lncRNA downstream 90302 54080783 ~ 54081079 (+) True G273252
TU310252 lncRNA downstream 90667 54081148 ~ 54081395 (+) True G273253
TU310253 lncRNA downstream 93058 54083539 ~ 54083773 (+) True G273254
TU310256 lncRNA downstream 96670 54087151 ~ 54087491 (+) True G273257
TU310260 lncRNA downstream 102037 54092518 ~ 54094138 (+) True G273261
XM_021597352.2 mRNA upstream 20388 53870750 ~ 53883922 (+) False LOC110520202
XM_021597353.2 mRNA upstream 20388 53870750 ~ 53883922 (+) True LOC110520202
XM_021597350.2 mRNA upstream 34772 53865468 ~ 53869538 (+) False LOC110520200
XM_021597351.2 mRNA upstream 34772 53865569 ~ 53869538 (+) True LOC110520200
XM_021597347.2 mRNA upstream 257885 53631774 ~ 53646425 (+) False parp14rs3
XM_036964950.1 mRNA downstream 54496 54044977 ~ 54149088 (+) False LOC110520205
XM_036974586.1 mRNA downstream 218394 54208875 ~ 54317829 (+) False LOC110520208
XM_036974587.1 mRNA downstream 218394 54208875 ~ 54317829 (+) False LOC110520208
XM_036974588.1 mRNA downstream 218394 54208875 ~ 54317829 (+) False LOC110520208
XM_036974589.1 mRNA downstream 218394 54208875 ~ 54317829 (+) False LOC110520208
TU310076 other upstream 62693 53841264 ~ 53841617 (+) True G273094
TU309978 other upstream 245627 53657461 ~ 53658683 (+) True G273004
TU309921 other upstream 251879 53648825 ~ 53652431 (+) False G272965
TU309923 other upstream 252158 53648825 ~ 53652152 (+) True G272965
TU309244 other upstream 567784 53291330 ~ 53336526 (+) False LOC110520190
TU311754 other downstream 883918 54874399 ~ 54875115 (+) False G274592
TU312073 other downstream 1384065 55374546 ~ 55375009 (+) False LOC110520231
TU312074 other downstream 1384065 55374546 ~ 55375526 (+) True LOC110520231
TU312821 other downstream 1909713 55900194 ~ 55900743 (+) True G275542
TU312833 other downstream 1924848 55915329 ~ 55916133 (+) False G275553

Expression Profile