RNA id: TU310256


Basic Information

Item Value
RNA id TU310256
length 341
lncRNA type intronic
GC content 0.43
exon number 1
gene id G273257
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54087151 ~ 54087491 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGCTGAAGGAGGCCAGACGGAGCTTGCCGCGGAGTCTTGCTTTGAGCACACACCATGCATCCGGTGACAAAGGCCGAGACATCAGGAGcccattcctctctctactctactgaaaatccctttgttaacattgagagagagtctggtgacatcaaaagatgggaaacggaaccatattgtggtaatccaaccagttgaaaatatgcattgggacttaatgaatatgatgccagttcagttggcgtctgagacatgattactgatgataggacgacataaactgtatcttggaaaatcTACACAttgaattgttgtgcaatttaaatgtttaaatatgaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310253 lncRNA upstream 3378 54083539 ~ 54083773 (+) True G273254
TU310252 lncRNA upstream 5756 54081148 ~ 54081395 (+) True G273253
TU310251 lncRNA upstream 6072 54080783 ~ 54081079 (+) True G273252
TU310169 lncRNA upstream 61850 53962021 ~ 54025301 (+) True G273173
TU310104 lncRNA upstream 221728 53865155 ~ 53865423 (+) True G273119
TU310260 lncRNA downstream 5027 54092518 ~ 54094138 (+) True G273261
TU310269 lncRNA downstream 25697 54113188 ~ 54113407 (+) True G273270
TU310275 lncRNA downstream 34234 54121725 ~ 54121953 (+) True G273276
TU310286 lncRNA downstream 48791 54136282 ~ 54136617 (+) True G273287
TU310226 lncRNA downstream 59257 54146748 ~ 54147360 (+) False LOC110520205
XM_036974583.1 mRNA upstream 96670 53904310 ~ 53990481 (+) False LOC110520204
XM_036974584.1 mRNA upstream 96670 53904310 ~ 53990481 (+) True LOC110520204
XM_021597352.2 mRNA upstream 203229 53870750 ~ 53883922 (+) False LOC110520202
XM_021597353.2 mRNA upstream 203229 53870750 ~ 53883922 (+) True LOC110520202
XM_021597351.2 mRNA upstream 217613 53865569 ~ 53869538 (+) True LOC110520200
XM_036974586.1 mRNA downstream 121384 54208875 ~ 54317829 (+) False LOC110520208
XM_036974587.1 mRNA downstream 121384 54208875 ~ 54317829 (+) False LOC110520208
XM_036974588.1 mRNA downstream 121384 54208875 ~ 54317829 (+) False LOC110520208
XM_036974589.1 mRNA downstream 121384 54208875 ~ 54317829 (+) False LOC110520208
XM_036974591.1 mRNA downstream 121384 54208875 ~ 54317829 (+) False LOC110520208
TU310076 other upstream 245534 53841264 ~ 53841617 (+) True G273094
TU309978 other upstream 428468 53657461 ~ 53658683 (+) True G273004
TU309921 other upstream 434720 53648825 ~ 53652431 (+) False G272965
TU309923 other upstream 434999 53648825 ~ 53652152 (+) True G272965
TU309244 other upstream 750625 53291330 ~ 53336526 (+) False LOC110520190
TU311754 other downstream 786908 54874399 ~ 54875115 (+) False G274592
TU312073 other downstream 1287055 55374546 ~ 55375009 (+) False LOC110520231
TU312074 other downstream 1287055 55374546 ~ 55375526 (+) True LOC110520231
TU312821 other downstream 1812703 55900194 ~ 55900743 (+) True G275542
TU312833 other downstream 1827838 55915329 ~ 55916133 (+) False G275553

Expression Profile