RNA id: TU310275


Basic Information

Item Value
RNA id TU310275
length 229
lncRNA type intronic
GC content 0.36
exon number 1
gene id G273276
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 54121725 ~ 54121953 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaatatctacattggtgtacagaggcccattatcagcaaccatcactcctgtgttccaatggcacattgtgttagctaatccaagtttatcattttaaaaggataattgatcattagaaaacccttttgaaattatgttagcacagctgaaaactgttgtcctgattaaggaagcaataaaactggccttatttagactagttgagtatctggagcatcagcatttatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU310269 lncRNA upstream 8318 54113188 ~ 54113407 (+) True G273270
TU310260 lncRNA upstream 27587 54092518 ~ 54094138 (+) True G273261
TU310256 lncRNA upstream 34234 54087151 ~ 54087491 (+) True G273257
TU310253 lncRNA upstream 37952 54083539 ~ 54083773 (+) True G273254
TU310252 lncRNA upstream 40330 54081148 ~ 54081395 (+) True G273253
TU310286 lncRNA downstream 14329 54136282 ~ 54136617 (+) True G273287
TU310226 lncRNA downstream 24795 54146748 ~ 54147360 (+) False LOC110520205
TU310225 lncRNA downstream 26169 54148122 ~ 54148940 (+) True LOC110520205
TU310846 lncRNA downstream 52618 54174571 ~ 54174807 (+) True G273801
TU310882 lncRNA downstream 90527 54212480 ~ 54225147 (+) False LOC110520208
XM_036974583.1 mRNA upstream 131244 53904310 ~ 53990481 (+) False LOC110520204
XM_036974584.1 mRNA upstream 131244 53904310 ~ 53990481 (+) True LOC110520204
XM_021597352.2 mRNA upstream 237803 53870750 ~ 53883922 (+) False LOC110520202
XM_021597353.2 mRNA upstream 237803 53870750 ~ 53883922 (+) True LOC110520202
XM_021597351.2 mRNA upstream 252187 53865569 ~ 53869538 (+) True LOC110520200
XM_036974586.1 mRNA downstream 86922 54208875 ~ 54317829 (+) False LOC110520208
XM_036974587.1 mRNA downstream 86922 54208875 ~ 54317829 (+) False LOC110520208
XM_036974588.1 mRNA downstream 86922 54208875 ~ 54317829 (+) False LOC110520208
XM_036974589.1 mRNA downstream 86922 54208875 ~ 54317829 (+) False LOC110520208
XM_036974591.1 mRNA downstream 86922 54208875 ~ 54317829 (+) False LOC110520208
TU310076 other upstream 280108 53841264 ~ 53841617 (+) True G273094
TU309978 other upstream 463042 53657461 ~ 53658683 (+) True G273004
TU309921 other upstream 469294 53648825 ~ 53652431 (+) False G272965
TU309923 other upstream 469573 53648825 ~ 53652152 (+) True G272965
TU309244 other upstream 785199 53291330 ~ 53336526 (+) False LOC110520190
TU311754 other downstream 752446 54874399 ~ 54875115 (+) False G274592
TU312073 other downstream 1252593 55374546 ~ 55375009 (+) False LOC110520231
TU312074 other downstream 1252593 55374546 ~ 55375526 (+) True LOC110520231
TU312821 other downstream 1778241 55900194 ~ 55900743 (+) True G275542
TU312833 other downstream 1793376 55915329 ~ 55916133 (+) False G275553

Expression Profile