RNA id: TU309930


Basic Information

Item Value
RNA id TU309930
length 5624
lncRNA type antisense_over
GC content 0.43
exon number 2
gene id G272966
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 53603136 ~ 53674498 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGATCAGCCTCCACTACATTACTTTGTAATGCCATATTAAGATAGTATGGGTTAAAATACGTGCACTATTTGTATTCTTACTCTTTACGGGAAGAAAAAAAATTCACATAAGGCAAATAGTCACAAAATGTCTGTTTTAGCATGTCAAACATCCCAGTGCTTTTCCTATTGATCATTTCCCCACACTCTAGAAGGCTCTGTATGGTTACTGTGATGGTCTCTGCAGAAGTCAacgcattcatacttcttgcaaTTCGTGGAGCAGAGCAGCGCTGTTGTCAAtaaagtgagtttgtgtttatgctGGACCTCCCGCCCCCACCTAGCGTCACCCACTCATGTCAATGCGGGGCTAATGATAACAATTCACTAGCTTCGATTGCAGTCCGAGACCAATGTGTCGCAGGGGGGAGACTATACATTTTCACCACTAGTTTGCTTTCTCTATCAATAAGATTAGCATTTCAGTGACATGCATTCTTTATCAGGTTGATAAAGAAAATCTTATTTGATAGTCACCATGTCTTTATTACTTTCAAAACGACAGATGAGAATTCAATCTAACCTTGTTCTTCCTTAGGTTGGTTGTGGTCCCCAGATGCCAGATACTCAAACAAGTAAATCCTGAACAAACATTTACCCACATCAACCTAGATTCAGCATACCCCTCTCTATCCAAGCACCTATTCCTATGGTCACAATGCTTTCCCTATCTTATTGCTGAACCATCAGTTTTAAAACAATCAAAACGACCACCTGTACTGTCAGGGCCTTAGGGCCAGTTTCCTGTCCCaaaagcctagtcctggacttaaAAAGCTTGTTCAATGGCAATTCTCCATTTAAAGTGCTTTTTAGCCCAGGACTAGGACTCATCTGTCAAGGAAACAAGCCctctgtgtttatagtttaataAAGGCGTGAAAACCTCCACCACCCCATTTTAATAGTAGGAATACAACCGAATTGGCACAGCTATTAAAGCTGTCTGTAACCTTATCTACTGTCTATGGAGCCCTTTCCAACCTGCCCTAATTTTAGCTTTACTCCTACTGTGTCTAAGCTGACCAAGTCATACAACAGTGGAGAGGGTAATGGCAGCAGGTTGTCACCCGTCTAACAGTGGGAAGGGCTGTTTCATAGCACCGGGTGCTTCACTACACATCAGAGAAAAGGACCATTCTCAGTAAGAACTATGAGCACCTTTCACAGAGAACAGGGTTGTATGTAATTTCCTTTCATGGAAAACATACCCCTGCTCACAGCTTTCATTCAATGATTTATGCATGTCTGGGACTATACTGGAGGTGCTAGTGAGTGCAGCTTTGTTCAATTGGTTTTGTACAGACTTACCATCAATTCTCCATGGTCTTCAGTGCATGTATACATTATAGAGCAACATTTATTAATATTACATTTGCTGCTTGAAATAACTTCACAATGCATTAATATGCTTGATATCAATCCCTGTGCTAGACGTCAACCCCTGGGCAGAAAAAGAGGGTAATTTATTGCTGAGAGAATTTCCTCAATAAGGCTCCATTTCACCAGCCTTGGCTGCAACACTGAGCTAGGTCCTCCAGATGTTGGCTTAATTATCTGTTAATAATCTCACTGTCAGTATGGAGATCCTTAATGCCATGACCGGACACCTAACAGGCTCCTTCACATAACAGATAACGCAGATATTAAGCCATCCATTTAAAACGGTTTCTGGCTTCACTAGCTTCCCCAGGCTCTAGATGAGACATGGGGCAGGTGGTTAGATTTTTCTTGCGGTAAATTGCTTTATTGTTATTGGAAAGGAAAAATATGACAGTGGAGGAAGGAACTGTGTGGCATTGGGTGAGATGAGGTTGGTGGGAGGTTAATGTAGCAGACAAATTACCCTATAAAACCTGGATTGAGATGAATAGCACCAACCAAAGACCAAATTAGATAATGCCAAGTATAAAACCCACATCCCCACCAATAGCAAAATAAACCACTATCTGCTTACACTGACATCTGAGGTAGGACTATACTTAGTGTTGATGAAAAATAATGATTTTATCATAAGTTTAAACATCATGAAAGAGGCCATCCAAAGCGGTTCGGTgatggacagagaaagagaaacccAGAGGACCCTCATCCATTTCAAAGGACTTCTTGTGATCTGAAAAAGCACATATTTTGGTGTAAACATTTATTGGTTTCAAACTGAAATAAAAATGACTTGCACCAGCACTGAACAGCCTTTCAGAATCCACACATTTTTATCTTTCGAGAGAAATaaaaaggaaatatatatatctcgtaccagtcaaaagatatggtaccagtcaaaagtttggacacactcattccaatgtttttctttatttttgttattttctacatagtagaataatagtgaagacaaactatgaaataacacatggaatcatgtaaccaaaaaaagcattaaacaaatcaaaatatattttatgagattattcaaagtagcgacactttgccttgacagctttgaacattctctcaaccagcttcatgagttaggtacctggaatgcatttcaattaacaggtgtgcctcaatttgtggaatttctttccctcGTAATGCttctgagccaatcagttgtgttgtgacaggtcaggggtagtatacagaagataaccctctttggtaaaagaccaagtccatattatgtcaagaacaactcaaataagcaaagagaaacgacactccattactttaagacatgaaagtcagtcaatacagaacatttccttcaagtgcagtcgcaaaaatcatcaagcgctatgatgaaactggctctcatgaagactgccacaggaaaggaagacccacagttacctctactgcaggaGATACGTTcactagagttaccagcctcagaaattgcagcccaaataaatgcgtcagagttcaagtaacagacatctcaacatcaactgttcagaggagactgtatgaatcaggccttcatggttgaattgctgcaaagaaaccactactaaaggacaccaataagaagagactcgcttgggccaagaaacacaagcaatgaacattagactgaTGGAaagctgtcctttggtctggagtcaaaagttgagatttttggttccaaacgccgtgtctttgtgaaacacaaagtaggtgaacgaatgacctccgcatgtgtggttcccaccgtgatgcatggagttggtgtgatggtgctttgctggtgacactgttggtgatttatttagaattcaaggcacacttaaccagcatggctaccacagcattctgcagcaatacgccatcccatctggttttgtgCTTaatggaactatcatttgtttttcaacaggacaatgacccaacacacctcccggctgtgtaagggctaattgaccaaggagagtgatggattgctgcatcagatgacctggcctccacaatcacccgacctcaacccaattgagatggtttgggatgagttggaccacagaacCACAGGTGAAACTCGTTGAGAGaatgcaacgctgtcatcaaggcaaaggttggctactttgaagaaactaaaatatattttgatttgtttaacacttttttggttactacatgattccatgtattatttcatagttttgatgtcttcaatattattctacaatgtagaaaatatttttaaaaataaatgaaagtaaaacccttgaatgagtaggtgtccaaacttttgacgggtactgtGTATTCAGTTGTATAAATGTGCAAACTGTCTTTTTTCCCCAGTGACCCAGTAGGTATATCATTTAAAAATACCTAATGAAAGATTTTAAACCATTGGCcttgtaggaggagaggagaaagagggagaacagTGTGGTGGAGAGAGGCCCTCCAAGCAGAGGATTGCTAAAATATGCAGTTGCAGTGGAGGAGTGTCATTTTTATCTCGACTTTTAAATTAAGTTAAAAACTAGGTGTGTCAAACAAAAGCCTTTCTTTGCTGCACTCATCTGTGCCCGCCTGTGACCAACACATACAGACCATTCACTGTGAAATGACAAGTGATTGAGATATTTAATTACCAATCCTATATAAATTATTTACAAGGTGCAGGCAGGTCTTTTCATTTAACAATAGACTGACTGGGGTGTCATTTTGTGTTTCTTGGAGAATAAATCAGTAGACTCTCAAGAGAAAGGCACAAGAGACCCATTGTGTAGCTAAGGGCGACTCCATGATGTACTGGCCACAATATGGGGCAAGTGGCTGGTGGCAGGGTGGCCGATAATCAGCTACCCTGGGGTGTGGGGAGGCTTTGGTTGAGTTAAACGGAACCAGGACAGACACTGCAACTGGGCTGGGGAATAATAATGAGCTTTGGGTCTGACTCAAGATTTCAACtataaaacaaattaaaaaataaaacaaaaatacagactGCCCTTTTGATATGTTCCGGCCGGTTCTCAAAACAGAGAGCAGACGGGTTTATAATATTTGGAACTCCAATAATCGTGGTTTTTAAATGTTTGTTCACGTCAGATCAGTGTTACGTTTCGCTCTTTTGTTCCTTTTCATCAAATCGTTAGTAAGAACATTACAAAGTACAACACAATCCCCCTAAGCAAGTCTCTAGTGGAAAAACAACCCTTAACAACAAGCCAACTTAGTGAGGAGTGGGGCTGGGGGGAGTGATGGCAACAGGAAGTGACTGGCGGTGCTGGTGAGGGGTGAAAGGTCAAGCCAGGGGTCCTTAGCGCCCTCTACTGGGAGCTGGCCCTCTCCAGGGGGTGTCTGTGGCCCCTGCTCACTGTGAGTCTGAAGGAGGCTTGGGGGCCATTGTGGTGGAGGAGGGCGTCCTGCGCAGTGTATCCGGAAGGGAACATGGCCAGGATGGTGTAGACGAAGGCTGGGTCAGCAGGGGCTTGACCGTGGGTTTGGGTGGGGGACACCGTTAGCCCCCCGACTGCCAATCTCGGAGGCTGTGGTGCTCTGGGAGCCATCCGACTACAGCCCGGGCTCTGGAGAGCTCACCTAGCAGAGAGTCCGCCTCGGTCCTGCTGATCTCTCCCGGCAGGTCAGTCACCTCCAGGACTtgcccactcactgtcacagaCTGGATCACCTACACTGAGATCTGTAGACAGAGCTTTCCTTGTCTGCttcctccctctgccccctccaCCGCTGTGCCGCATCCCCATGGGTACCTGGGTGCAGAAAGAAGGACAAAAGCATGTTCAGATTACCATCTCTCGCAACTATACTTTCTTTGGACTCCAGCTTAAGGTATCGGAATGATAATGATTCAATTGGAAGACCAATGAGGAACAAAAGAATCAGAGACCAATGTTTGACTTCATCTTTTGTTTTATTTGCACAGTACTAAAGATATGTTTCCAGGCTTTGCCAAGCATTTCAGAAGGGTATATTGAAATCCCCACATAATTCCTCCTATAAACAATAGGTAGCTTCAACTTAAGTGGATGATCTGTATTGTGTAGACTCACCTGATGGTTGGGGACCATGGGTGGAGCGTGGAGAGGAGGACGGATCTGGGGGTTGTACTGGAGGGGCTGCCCTAGTAACGGGTACCGCACATCTCCTGGGAAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU309979 lncRNA upstream 3488 53661990 ~ 53664217 (+) True G273005
TU309963 lncRNA upstream 70085 53597339 ~ 53597620 (+) True G272989
TU309962 lncRNA upstream 70427 53597024 ~ 53597278 (+) True G272988
TU309958 lncRNA upstream 77840 53589665 ~ 53589865 (+) True G272984
TU309956 lncRNA upstream 80774 53586652 ~ 53586931 (+) True G272982
TU309932 lncRNA downstream 273 53673892 ~ 53674498 (+) True G272966
TU309995 lncRNA downstream 29163 53702782 ~ 53705181 (+) True G273016
TU309998 lncRNA downstream 32803 53706422 ~ 53706886 (+) True G273019
TU310000 lncRNA downstream 34699 53708318 ~ 53708572 (+) True G273021
TU310002 lncRNA downstream 35653 53709272 ~ 53709501 (+) True G273023
XM_021597347.2 mRNA upstream 21280 53631774 ~ 53646425 (+) False parp14rs3
XM_021597348.2 mRNA upstream 21280 53631774 ~ 53646425 (+) True parp14rs3
XM_036974577.1 mRNA upstream 23596 53631769 ~ 53644109 (+) False parp14rs3
XM_021597345.2 mRNA upstream 38420 53600172 ~ 53629285 (+) True LOC110520196
XM_021597343.2 mRNA upstream 217823 53436028 ~ 53449882 (+) True LOC110520194
XM_021597350.2 mRNA downstream 191849 53865468 ~ 53869538 (+) False LOC110520200
XM_021597351.2 mRNA downstream 191950 53865569 ~ 53869538 (+) True LOC110520200
XM_021597352.2 mRNA downstream 197131 53870750 ~ 53883922 (+) False LOC110520202
XM_021597353.2 mRNA downstream 197131 53870750 ~ 53883922 (+) True LOC110520202
XM_036974583.1 mRNA downstream 230691 53904310 ~ 53990481 (+) False LOC110520204
TU309978 other upstream 9022 53657461 ~ 53658683 (+) True G273004
TU309921 other upstream 15274 53648825 ~ 53652431 (+) False G272965
TU309923 other upstream 15553 53648825 ~ 53652152 (+) True G272965
TU309244 other upstream 331179 53291330 ~ 53336526 (+) False LOC110520190
TU309190 other upstream 444440 53221427 ~ 53223265 (+) True LOC110520187
TU310076 other downstream 167645 53841264 ~ 53841617 (+) True G273094
TU311754 other downstream 1200780 54874399 ~ 54875115 (+) False G274592
TU312073 other downstream 1700927 55374546 ~ 55375009 (+) False LOC110520231
TU312074 other downstream 1700927 55374546 ~ 55375526 (+) True LOC110520231
TU312821 other downstream 2226575 55900194 ~ 55900743 (+) True G275542

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00040264 False 3126 mRNA 0.52 13 NC_007133.7 12366516 ~ 12391283 (+)
grasscarp (Ctenopharyngodon idella) TU104966 True 2076 lncRNA 0.33 3 CI01000015 7581390 ~ 7589486 (-)