RNA id: XM_021584437.2



Basic Information


Item Value
RNA id XM_021584437.2
length 669
RNA type mRNA
GC content 0.54
exon number 3
gene id crygs2
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55389101 ~ 55391332 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


ATGGGCAGGATTGTGTTTTACGAGGATAAGAGCTTCCAGGGCCGCCGTTATGAGTGTGACAGCGACTGCACCGACTTCCATTCCTACCTGAGCCACTGTAACTCCATCCGTGTGGAGAGTGGAGCCTGGGTGGTGTACGAGAGGCCCAACTACATGGGCTACCAGTATGTTCTGACCAGGGGAGAGTACCCTGAATACCTGCGCTGGATGGGCCTCAATGACCGCCTCAGCTCCTGCAAGATGATCCACTTTTCCTGTGGGACCCAGTACAAGATGCAGCTGTATGAGAAGGATGACTTCGCGGGCCAGGCCTTCGAGGCCGCCGAGGACTGCCCCTCAGTCCTGGAGAAGTACCGTTGGAGGGAGGTGTACTCCTGCAAGGTGCTGGATGGCTGGTGGGTCTTCTACGAGCACCCCAACTACCGTGGACGCCAGTACTTCCTGGAGAAGGGAGAGTACAGGAAGCCTGGGGACTGGGGTGCAGTCAGTCCCACTGTCCAGTCCTTCAGACGCTTCACTGAGTGATCCTCCTGACCACAACAACACCAACCTCAACACCAACCTCAACCTCAAACCCAACCTCACTATTATCATACATAATatgcataatatggactttgaaTAACGCCTATCCTATTACTTTGAGTCCTTTGATTGTGACTTTACTGA

Function


GO: NA

KEGG:

id description
K23483 CRYG; gamma-crystallin

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU312480 lncRNA downstream 1877 55386974 ~ 55387224 (-) True G275234
TU312475 lncRNA downstream 13582 55375100 ~ 55375519 (-) True G275229
TU312426 lncRNA downstream 17453 55367204 ~ 55371648 (-) True armc8
TU312428 lncRNA downstream 32670 55355925 ~ 55356431 (-) True G275183
TU312427 lncRNA downstream 33510 55354015 ~ 55355591 (-) True G275182
TU312488 lncRNA upstream 925 55392257 ~ 55392949 (-) True LOC110520233
TU312490 lncRNA upstream 6558 55397890 ~ 55398246 (-) True G275243
TU312491 lncRNA upstream 8471 55399803 ~ 55400473 (-) True G275244
TU312495 lncRNA upstream 13144 55404476 ~ 55404714 (-) True G275248
TU312496 lncRNA upstream 14173 55405505 ~ 55405705 (-) True G275249
XM_021597399.2 mRNA downstream 6940 55375915 ~ 55382161 (-) True LOC110520232
XM_036974625.1 mRNA downstream 17434 55357367 ~ 55371667 (-) False armc8
XM_036974626.1 mRNA downstream 17434 55357367 ~ 55371667 (-) False armc8
XM_036974627.1 mRNA downstream 17434 55357367 ~ 55371667 (-) False armc8
XM_036974628.1 mRNA downstream 17434 55357367 ~ 55371667 (-) False armc8
XM_036974634.1 mRNA upstream 857 55392189 ~ 55395003 (-) False LOC110520233
XM_036974642.1 mRNA upstream 201032 55592364 ~ 55715785 (-) True LOC110504309
XM_021597405.2 mRNA upstream 388171 55779503 ~ 55788119 (-) False LOC110520238
XM_036974651.1 mRNA upstream 388171 55779503 ~ 55821242 (-) False LOC110520238
XM_021597406.2 mRNA upstream 397069 55788401 ~ 55792175 (-) False LOC110520238
TU312299 other downstream 269889 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 706296 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2138017 53249926 ~ 53251084 (-) True G272713
TU309282 other downstream 2680285 52708183 ~ 52708816 (-) True LOC110520182
TU307459 other downstream 3788871 51597935 ~ 51600230 (-) True il1rl1
TU312498 other upstream 18811 55410143 ~ 55411487 (-) False G275250
TU312500 other upstream 18811 55410143 ~ 55411487 (-) True G275250
TU315090 other upstream 1879450 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 2011652 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 2193054 57584386 ~ 57589183 (-) True G277749

Expression Profile