RNA id: XM_021597405.2


Basic Information

Item Value
RNA id XM_021597405.2
length 1899
RNA type mRNA
GC content 0.45
exon number 7
gene id LOC110520238
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 55779503 ~ 55821242 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGGAGGAATGACAACCATTTGGTAGCTCACTACTCCCAGTTCTTGTTATCCGTCACATAAGCTTGTGCATCATTTGCATCCGGGCATTCTGTCGAGATGGTCATGGCGGAGGGTACTGCAGTTCTGAGGAGGAATAGGCCTGGAACCAAGGCGAAGGATTTCTACAATTGGCCGGATGAATCCTTTGAGGAGATGGACAGCACTCTGGCTGTACAACAGTACATTCAGCAGAACATCCGGTCAGACTGCTCTAACATCGATAAGATCCTGGAGCCTCCAGAGGGACAGGACGAGGGAGTGTGGAAGTACGAGCACCTCAGGCAATTCTGTCTGGAGCTGAATGGACTAGCTGTGAAACTGCAGAGTGAGTGCCACCCAGACACCTGCACGCAGATGACTGCCACAGAGCAGTGGATCTTCCTATGTGCTGCACACAAAACCCCCAAAGAGtgTCCTGCCATTGACTACACCAGGCACACGCTGGACGGAGCTGCCTGCCTTCTCAACAGCAACAAGTATTTCCCCAGccgCGTGAGCATCAAGGAGTCCTCTGTAGCCAAGCTGGGCTCTGTGTGTCGCCGTATCTATAGGATATTCTCTCATGCCTATTTCCACCATCGTCAGATATTCGACAAGTATGAGAATGAGACGTTCCTGTGCCATCGGTTCACACGCTTCGTGATGAAGTACAACCTGATGTCCAAGGACAACCTGATCGTTCCTATCCTGGAGGAGGAGGTCCAGAACGCTTCAGCCGGGGAGAGCGAGGCCTGAGAGGAGAGCTGCTCACAGGAGACCAGACGTGTATTCAAATactgcttgattgagcttgcctgttgcAATGGAACCAAGAGAAGTCCCACATgtgcaaaccccacccatctggcactctaaagcaaatgctcaaagtatttgaaagatttcagatagtatttgaaccaatgattttTATATACACTagactgacagggggcgctgttttgAAGCCACCGCGCCCCCCATCTTGGCACCATTGTAAAAAAatgtctacaattgtttttgCTACATTTACTCTATTACAGACAGCTACATGCATAATTTGTAATTGTGTGAGCTAAaagttaaaaaaatgtaattttaaaCATCCTTAAAAGTACTAATGTTACTGGCCCCGCTACAACAATAATActtaaataaatgtaattttgtccttgaaacattcaAGTGGAATTCCTTTAATTCCTATGGactgccaatatggccgaccggtggcttcaaagcctctcattagCCAATGCATCAGCAATCCaaagtttatatacatcattgattTGAACGCAGGTCTGAAACAGCTACACACTACAGACAGGCTCTCACTACTTGCTTTAACATTTTAAGCATCTGGATTTGCTCAACCTACATAAAAACAATGTGTTGATGACAAAGGCACACACTCATGggctccctgtatataacctctgcTCTCCCATGTCCCCCTCCATCTTGTTTTCCTGGTGCTTTATATTCTCTCTGCCTTTGTTCTCTCTCGCTGAATTGTAAATGGAACCCTTgccactcctgtagatctgagaggattggtgGAAAAATGCAGACATTTCCATGCAGCCCATTGGAAGGCAAGATGAAGCTATGACTATAATGCTTCTGTATCCAATCTGCCCaaatgtacaggtgtgtgtagggTTTAGAGGCTACGGATCCATTTGTGGTTCAGAATCTCTGCTTTTGTTGCTCTGAGTACATACCTCCGTCACCATTTACCCTCCCCCCCGTCATTAAGTTATTTTGTGAGAGGAGTCTTGTCTATCTGGCCCACTTTTCAATTTTCCTTTTTTAATGAACtgaatttattttttacattttcatgATGTCTGTTAATAAAAAAAGACTGTTACCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU313856 lncRNA downstream 11167 55766309 ~ 55768336 (-) False G276458
TU313857 lncRNA downstream 11167 55766309 ~ 55768336 (-) True G276458
TU313844 lncRNA downstream 39747 55739422 ~ 55739756 (-) True G276446
TU313843 lncRNA downstream 40915 55738370 ~ 55738588 (-) True G276445
TU313841 lncRNA downstream 45669 55733500 ~ 55733834 (-) True G276443
TU313819 lncRNA upstream 92888 55881007 ~ 55881558 (-) True G276421
TU313833 lncRNA upstream 123284 55911403 ~ 55912477 (-) False LOC110520241
TU313828 lncRNA upstream 132415 55920534 ~ 55923859 (-) True LOC110520241
TU313832 lncRNA upstream 145717 55933836 ~ 55934130 (-) True G276434
TU313818 lncRNA upstream 148498 55936617 ~ 55937022 (-) True G276420
XM_036974642.1 mRNA downstream 63718 55592364 ~ 55715785 (-) True LOC110504309
XM_036974634.1 mRNA downstream 384500 55392189 ~ 55395003 (-) False LOC110520233
XM_021584437.2 mRNA downstream 388171 55389101 ~ 55391332 (-) True crygs2
XM_021597399.2 mRNA downstream 397342 55375915 ~ 55382161 (-) True LOC110520232
XM_036974627.1 mRNA downstream 407836 55357367 ~ 55371667 (-) False armc8
XM_021597406.2 mRNA upstream 282 55788401 ~ 55792175 (-) False LOC110520238
XM_036974648.1 mRNA upstream 282 55788401 ~ 55821210 (-) True LOC110520238
XM_036974661.1 mRNA upstream 102263 55890382 ~ 55915483 (-) False LOC110520241
XM_036974659.1 mRNA upstream 102263 55890382 ~ 55923882 (-) False LOC110520241
XM_036974660.1 mRNA upstream 102263 55890382 ~ 55923882 (-) False LOC110520241
TU312498 other downstream 368016 55410143 ~ 55411487 (-) False G275250
TU312500 other downstream 368016 55410143 ~ 55411487 (-) True G275250
TU312299 other downstream 660291 55103494 ~ 55119212 (-) True LOC110520227
TU311493 other downstream 1096698 54679918 ~ 54682805 (-) True G274344
TU309646 other downstream 2528419 53249926 ~ 53251084 (-) True G272713
TU315090 other upstream 1482663 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU315188 other upstream 1614865 57402984 ~ 57403575 (-) True G277673
TU315276 other upstream 1796267 57584386 ~ 57589183 (-) True G277749
TU322065 other upstream 6926456 62714575 ~ 62715177 (-) True G284018
TU324819 other upstream 9181430 64969549 ~ 64970755 (-) True G286522

Expression Profile