RNA id: XM_021597654.2


Basic Information

Item Value
RNA id XM_021597654.2
length 6067
RNA type mRNA
GC content 0.50
exon number 24
gene id LOC110520377
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 63780997 ~ 63822595 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAATCCTGTTTCCATCCTGCATAGTAGGTGGCGGGATGCACATTCAATTGTGTGATCGCCAATATACCATCGATGAAGAAGATTTGACCTACGTTCGTTGTGACGTATGTACGTACGGACGTTGGTTGAAGCGGAAATGACCTGAAGCTTTAGACAGCACCAAAATATTGAAATCCTTTCGTTTTCAAATCGTACAGTAACACAGATTACCGATTTCGTTAACGATTGGGTACTTAAATTGCGTCGATCAAGATGGAGCAGGACACCAGCCCAGAGTCTGTGACCTCACCTCCTCCAGGTGCCGCCGCTAAGTCAAAGTTGGACACGTTGTCCAAAGATGACCTCATCAAGTTTGCCAAGAAGCAGATGGCTGCCATACAGAAGATGAAGTCCAAATGTGCAGttttggaaaagGAGGTTGATACTCTCAAGTCTCAGCCAAAAGGCAATTCAGGTGACTCCATCATACAGGAACTGACCGAGAGGATGAGTGCCTTGTTGCTGGAAAAGGCTGAGACCCAGCAGAGTGCGGTGTTGCTGCGGAAGGAGAATGAGAAGGTCAAGCACCGGGAACAGGATGCAGTAGAGAAACTGGCCACCCTGCTGGGAGAGTTGGACCAGGCCAAGGAAGACCACCAGAAGAAAATTGCAGCCTTGGAGAAGAGCTTAGACTCATCCCAAGCCAAACACAAAGAAGAAGTTGAATTTTTCCAGAGGCTTCTGAGGAAGAAagaagagaatgacagagagaaagagagcgaaagagagaaagaaaagcagAGAGAAAGGGAACACACAAACCAGAGTGTAGAAGCCGTTAGCTGCAGCCTGGAGTCACAGATCCTGAGTCTGCAGACAGAGCTAGCTGCAGCCTTGGAGCGAAGCACCCAGGTGGCTTCAGCGCTGCAAGAAGACCACCAGAGGGCGCTGACAGAGGCCCAGCAGGAAGTAGAGAACCTGAGAGAGGAGTTGGCTCAGCATAGTGTGCAACATGAAGAGGAGCTGAGAGCTCTGGAAGAGGACtttgagatggagaaagagagactgcTACTCCTCCAAGAGGAGCTCAGTGAGCAGCTGGCTCTCAAAGACAGCTTCCTGCAAGATGTGCAGGAAGGTGAGGAGGAGCCTAGCGGCCGCAGCTCAGGAATAGCCAGGATGTTGGAGCTGTCTGGTTTAAGTCTGATTGATGCCagtgatggagagacagagagcggacAGCTACGATCTGCCCTGGAGGACCAGCAATCCCAGAATACCATGCTGCAAGACGAGCTGACCTTCCTGGGGAATGTAAAGACTAAACTGGAGGCGGAGCttgagagggtgagggaggagttTCATACAGAGAAGGAGGAACTACAGTTTAAAATCGAAGAGTTGCTGATGACCCGGGAGGTTGCGACCCCTAACCGTGACCTTCAGGAGGCTCAAGCTTTCACTCAGCTCCAGCAGAGCGGCCCACAGAGAGATTCAGTGGACGGCCTACCTGCCAGTCCTGCTAGCCCTTCCAGCCTCAGACAGagcctgtcctgccctgtccctgGTGCAGCCCACCAGAGCCTGACCCTGCAAGAACAGCAGGGTCAGGCTCAGGAGCTGAGGTCCCAGTGTGAGTACCTAGACAGGAGCCAGGCGGTGGCTGAGTACGAACACACCAGAGACATCCTGAGAGGCCTGGAGACTGAGCTAGGTCAGAGGACCGGGGACGTCACCAGACAGTATGAAGCTATGAAGGAACATGCGGCTTCTGCAGTCCAGGAGCTACAGGAGAGCGTCAGAAGGCTTACTGAGGAGCGAGATGGTCTGGTGGAGAGGGTGAAAGGGTTCGATGAAGACAGAGACAGCCTGTTGGAAAAGGTCCAGGGCCTGGAGAAGAGGCTGGAGAGCTTCCTAAAGCAGACACAGGCAGCCGAGGGGCTGAAAGAGCAGCTGCAGACGTCTATGGAGGAGAAGACTGCGTTAGCCCTCAAGCTAAAGAACTCAGTAGAGGCGCAGACAGTGTTAGCGTCTGAGCTAAAAGCATCTCTTGAGGTGCAGACAGTGTTAGCTGTAGAGCTAAGGGCTTCAGTGGAGGATCTGAGCAAGCAGAACGGGGAGATCCTCTCTCAGCTACAGATGAAGGAGAGTGCTGTTCAGGAGTTAGAGGAAACAGTCGATGTGgtgagcacagagagagacagaacactgTCAGCACTgcaggacagagagatggaggtgaTGAGGCtgtgggaggaaagagagagggaggtggaggagagtcaAGGCCAAAGAGAGGAGGTGGTTGAGCTACAGGCTCGTATAGAGGAGTTAGAGAAGGAGAGGAGCCTGCTGAAGAGTAATCTAGAGGTGGTGCAGAGGGAGAGTTCTAAGAATGTGCAGGGGAGCccaggggaggaggtggaggagctacAGGCTCGTATAGACgagctggagaaggagaggagcctGCTGAAGAGTAATctgggggaggtggtgggagaTACTGAAGCTCTACAGAAAGACCTAAGAGAGATGAAACTGGCCAATGAGAAGATGAGAACAGAGAACCAAGAACTACTGACACAGGTCAGCCAGGCTACAGAGAcactggtagacagagagagggaggaaaaggaggggagagagacggagagagaggaggaggaagaacaggcgaagaaggagaggagagagctacAACAGCAGCTAACAGAGAAGGACACAGTGATATCTCAGCTGAGAAGTGAGATGGCTGGCTTACTCTCTTCAGCCccgtctcctgtctcagaggAGAACACAGCCAATGAGTTCACTGAGAAAATCGcCCTGCTGGAGAAGGAAAGCaaagagaaggatgagaggatgaATAAGATCAAGGCGGTGGCTGTGAAAGCCAGGAAGGAGCTGGACACCAGCAGGAAAGAGGCTGTGTCGCTgaaggaggaagtggaggtgttgaaggctgagagagagagagtgaccagCTCAATGAAAGACATCATCCATGGAGCAGAGGGATACAAGaacTTGCAGCTGGACTACGACAGGCAGACAGAGCAGctggataaggagagagagacggtggaGGGAGCTGAGAAACAGATCTCTGAGCTGACCAAACGACTAAACAACGCAGTACAACagCATGAACAGCTGTGGTCGGAGAGAGAGGACCTGATGACCGAATTGGAGACTCTGAGGAATACGGTGAGACAGATGGAAGGACAGACAgcagaactacacagacagacagacaccctgaACAGAGACCTGCAGGCTGAGCGACTACTGAAGGAACAGAagacaaagGAGCTGTCATCGTTgcagaaggaggtggaggagttgACAGTTCAGCTCCGCAGACAGAAGCAGCAGTCTCAGCAGACAACACAGGAGCTGGAGCAGCTACGCAAGGAGGCCCAGCAGAGCTCGTTGTTGGACATGGAGATGGCAGACTATGAACGCCTGGTCAAAGAACTCAACACCAAACTGTCAGAGAAGGACGTGTGTGTGGAGGAGCTgaaaacacagatacacacacacacacagaaagaagaCACACTCAACCAGGAGATCGAGGTTCTGAAGTCCCAGATGGACCAGGGGGAGGATAAGAGCTCCAAGATGAAACAGCTGCTGGTGAAAACCAAGAAAGACCTGGCTGATGCCAAGAGACAGgaagcCATTCAGATGATGACGCTGGCCTCTCTGAAGGGAGAGCTGGAGGCACATCAACAGCAACTAGAGAACAACAAGATCCAGTGCTGTGACCTGACTGCGGAGCGCCACAGACTACAGGAGCAGCTGAGGACTCTGACTGAACAACAGCAGAGAACAAGCAGCTCCCTGCAACAGAGACTGACCACACTACAGCAGGAGGCTAACACTGCCAAGGCTGAGCTGTCATCTGTCACTGCTGAGTTTGACAGCTATAAGGTCAGAGTTCACAACGTCCTCAAACAACAGAAGAACAAAACCTCAGCACAGAGCGATGGAGACGCCACTAAACAGGAGAGagagcagACGGAGTCCTTGGTGGACCAGTATAAAGCCAAGCTGCAGGACAGTCAGCAGAGTCTGGCGGTGAGCACTGCAGAACTACAACAGCTCCAGATGGAACATGACACACTGCTGGAACGACACAACAAGATACTGCAGGAGACCGTTGCTAAAGAGGCCGAGCTCAGAGAGAGATTCATGTCTCTCCAGGCTGAGATTATGTCACTGCGAACAGAGCATGCTCAGACGGTGGGTCAGCTGACCTCGCAGGCCGTGGCCCAGCGCTCCGGGTTCAGGGAGCAGATCCGCCACCTTCAGGATGAACACAGAACTACAGTAGAGACCCTGCAGAACCAGATGACCAGGCTGGAGAACCAACTGTTTACACTGCAGAAACAGACCAGTCCAGCTCCAGTCCAGACCAGTCGTAAGTCAGCGGTGGACCGCCGGCCCGTGGACCAGGGGGGAACGGGGGGGCTGGGCCTCGGTGATCTCCAGTCCATGgctagagaggagggggagggcatGGAGACCTCCGAGACAGAGTCCCTGTCATCCACATACCTACCCTCACTGGAGCAACTACTCACCTCCCCAGACCCCAAACAGGAGCCGTTTGTGTGGCAGGTGGAGCCGACTAAAGAGGAGTTGAATCAGAAGTTGACCACAGCTACACGCAGTATGGAACACATGAACAGTCTACTGCATGAGACCGAAGCTACTAACGCTGTTCTGATGGAACAGGTTaatCTGTTGAAGTCTGAAGTGCGTCGTCTGGAGCGTAaccatgagagagagaagagtgtagCCAACCTGGAGTATCTGAAGAATGTCCTTTTACAGTTCATCTTCCTGCAGTCAGGCAGCGAGAGACAGGCTCTACTCCCTGTCATACACACCATGTTACAACTCAGCCCTGAGGAGAAGAATAAACTGGCTGCTATCGCAAtgggtgaggaggaggtgggaggagctAGAGGCTCAGGATGGACCTCCTACCTACACAGTTGGTCAGGCatcagatgaacacacacacacatcaaccaaTGTCCTCTTTCTACCTGCCTTCACTTTCATCTGGTCCATATGTCTGATCAACTGAGTAATTAAAAAGTCTTAATATATTGATGATCATCCATCTACTTGAAAAAAAGCCAGTAGTCAGCAATGCCAGTACTCTTTTGTTTTCTTTAGCTGATGGTACGTTACTGAACCATTTATGGTGGGTTAATTCACCAATACCTCAGTCATTACTGGGATTATTTTTATGAGATAGATTTTGTTGCTTGTAACAATCAATTCCAAGCAACACTTATGTTTTACAATAATTCATGAAGTGAACTATGACTGTTACAGATTTGACCATCTGTTTTCATTGCTCACTCATCATAGGTCTGATACAGGGCAGCGGGTAGCCTAGCAGTTACAAGGCGCTGTATGGTCAATCTGACATCTacatttgccttgcagcatttatggtgatatggcctctgcagaagtcaggtaTTCATACTCATACGCTTCATACGCTTCGCagaactgttgtgaaggaagttgtcaatgaagtgagtttgtgtttatacaggacctaccgtcaaccaattatgtcaatgcggagctatactgAGCCCTCCACATTGTTAATACATTTGGCAGGTGCACGGAAATGTGGTACGGAGCTCAGTTTGGCCTTTTCATGCCTCCGGAGGCTCTGCAATTGCATCACACCCTACATACGGAGCCTTTGGATCAACCACAAATTTGCTTTAAGAGTGttgtgccagtaaccaaaaggtcggtggttcgaatccctgagccgactaggtgaaaaatatgttgatgtgcccttgagcaaggcacttaattcgaattgctcctgtaagtcgctctggatatgagtgtctgctaaattataaAAACATATGTGATGAATTGACAATATTCACATGTTCAAATTCACAcctatttaatttattttgatGTATCAATATTACATACCAAAGGATGCTCTGGTAATATATAGGTACATAATCTGTAATTGGGAACAACttaaatatatgtaaatatacattgagtgtacaaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323553 lncRNA downstream 120575 63648216 ~ 63660422 (-) True G285338
TU323484 lncRNA downstream 258980 63521727 ~ 63522017 (-) True G285277
TU323035 lncRNA downstream 273203 63507586 ~ 63507794 (-) True G284861
TU323027 lncRNA downstream 281427 63499271 ~ 63499570 (-) True G284855
TU323020 lncRNA downstream 286500 63494070 ~ 63494497 (-) True G284848
TU323638 lncRNA upstream 44588 63867183 ~ 63868625 (-) True LOC110520378
TU323688 lncRNA upstream 128862 63951457 ~ 63952165 (-) False G285444
TU323687 lncRNA upstream 129377 63951972 ~ 63953643 (-) True G285444
TU323689 lncRNA upstream 132815 63955410 ~ 63955880 (-) True G285445
TU323711 lncRNA upstream 169519 63992114 ~ 63992941 (-) False G285466
XM_036974912.1 mRNA downstream 1430 63745210 ~ 63779567 (-) True LOC110520376
XM_036974910.1 mRNA downstream 4605 63745210 ~ 63776392 (-) False LOC110520376
XM_036974909.1 mRNA downstream 6950 63745210 ~ 63774047 (-) False LOC110520376
XM_036974913.1 mRNA downstream 7923 63745210 ~ 63773074 (-) False LOC110520376
XM_036974905.1 mRNA downstream 17545 63745210 ~ 63763452 (-) False LOC110520376
XM_021597657.2 mRNA upstream 44566 63867161 ~ 63875731 (-) False LOC110520378
XM_021597658.2 mRNA upstream 44566 63867161 ~ 63875738 (-) False LOC110520378
XM_021584574.2 mRNA upstream 59262 63881857 ~ 63886501 (-) True LOC110505387
XM_036964575.1 mRNA upstream 78873 63901468 ~ 63904213 (-) False LOC110505395
XM_036964588.1 mRNA upstream 78873 63901468 ~ 63904213 (-) False LOC110505395
TU322065 other downstream 1065820 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 6191814 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 6377422 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 6483235 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 8369510 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 1146954 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 1191664 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 1232105 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 1232105 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 1412585 65235180 ~ 65235908 (-) True G286953

Expression Profile