RNA id: XM_036974917.1


Basic Information

Item Value
RNA id XM_036974917.1
length 5867
RNA type mRNA
GC content 0.50
exon number 18
gene id LOC110520379
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64485789 ~ 64641565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGACATCAGCCCCGGAGCCGAGTTGAACGCGAGCCTCTTGTCTGAACAGGAGAGCGAGCTCACATCATTCAGTGGCGCATGCTTTACGGAGTTATGTACCTCGCGCTGTCTTGCCCTCTGAACTGCCTGCCGTCATGGATTGCAAACCGCGCGCGAAACCACTACTACTTTGTATTTTTCTGTTCATCTTGTCGTTTATTTGCCCAGCACTTCTGATCATCCACCCGTCCAATGAAgtGAACCTGTTGGACTCCAAAGCCAGCCAGGGGGAGCTGGGATGGATATCCTACCCATCACACGGGtGGGAGGAGATCAGCGGAGTTGACGAGCACTACACTCCCATCAGGACCTTCCAGGTGTGTAACGTGATGGAGTACAGTCAGAACAACTGGCTGAGGACCAACTGGATCCCCCGCCAGTCGGCCAAGAAGATCTACGTGGAGCTAAAGTTCACCCTGAGAGACTGTAACTCCATCCCCCTGGTCCTGGGGACGTGCAAGGAGACCTTCAACCTGCTGTACCTGGAGACGGATGAGGACCAGGGCAGCCGCTTCAGAGAACACCAGTTCTCCAAGATCGACACCATTGCTGCAGACGAGAGCTTCACTCAAATGGACCTGGGGGACCGCATTCTGAAACTCAACACGGAGGTCCGGGAGGTGGGGCCTGTTACCAAGAAGGGCTTCTACCTGGCGTTCCAGGACGTGGGGGCGTGTGTGGCCCTGGTGTCAGTCAGGGTGTACTTTAAGATGTGCCCGTTCATCGTTAGGAACCTGGCCTCATTCCCTGACACGGTGCCCATGGACTCTCATTCATTGGTGGAGGTGAAGGGCTCGTGTGTCAATCACTCAAAGGAGCAGGAGCCACCACGTATGTACTGTAGCACAGAGGGAGAGTGGCTAGTGCCCATAGGGAAGTGTCTGTGTAACGTCGgctatgaggagagagggagctcCTGCCAAGcatgCAGAGCAGGGTTCTATAAGTCTCTGCTGGGTAACGTCCAGTGTTCTAAGTGTCCACCCCACAGTTTCACCCATCATGAGGGAGCTCTACACTGTGGCTGCGAGAAAAACTACTTCCGCGCTGATGGAGACCCGCCATCTTCGGCCTGCACACGTCCTCCCTCAGCTCCTCGTAATGTGATCTCAGTCATCAACGAGACCTCAGTGATTCTGGACTGGTCCTGGCCAGAGGACACGGGGGGTCGTAAGGATGTGACCTTCACAGTGCTGTGTAAGCTCTGCAGGCCTGGTCAGAGGGTGTGTGAGGCATGTCGCAGCAATGTGCGGTTCCTCCCCCGTGCTGCGGGCCTGCAGAACACTACTGTTACCGTGGGAGACCTGCTGGCTCACACCAACTACACTTTCGAGATTGAGGCTCAGAATGGAGTGTCCCAGTTAGCCCCAACCATGAGGCAATATGCTGCGGTGACCATCACTACCAACCAAGCAGcCCCTTCTCCAGTGACTGTGATCAGGAAGGATCGCACGTCCCGTAacagcatctctctgtcctgGCTGGAACCAGAGAGACCCAATGGCATCATACTGGACTACGAGGTCAAATACTACGAGAAGCAGGAGCAGGAGACCAGCTACACCATCCTGCGCTCTAAGGGTTGTAATGTGACTTTAAGCGGTCTGAAGGCAGACACCTCCTACCTGCTCCAGATCAGGGCCAGGACTGCAGCAGGATATGGAGCCAGCAGCAGGAGCTTTGAGTTTGAGACCAGCCCTGACTCATTCTCTATCTCCAGTGAGAGTAGTCAGGTGGTGTTGATAGCCATCTCCTCCGCTGCGGCCATCATCCTGCTCACTGTCCTCCTCTACATTGTGATTGGCAGGTTCTGTGGCTACAGGAGGTCTAAACACCCTGATGAGAAGAGACTGCACTTTGGCAATGGACACTtgCGTCTGCCAGGTATAAGGACCTACGTAGACCCTCACACCTATGAAGACCCCAGTCAGGCCGTCCATGAGTTTGCCAAGGAGCTGGATGCTTCCTGTATCGCCATCGACAAGGTGGTGGGAGCAGGTGAGTTTGGGGAGGTGTGCAGCGGTCGTCTGCGTCTGCCCAGTAAGAAGGAGAACTGTGTGGCCATCAAGACTCTGAAGGCAGGATACACCGACAAACAGAGACGGGACTTCCTGTCTGAAGCGTCCATCATGGGACAGTTTGACCATCCAAACATCATCAGGCTGGAGGGAGTGGTCACCAGGAgTAAACCTGTGATGATAGTAACTGAATACATGGAGAACGGATCCTTGGACAGTTTTCTGAGAAAACACGATGCCCAGTTTACTGGTATCCAGTTGGTGGGCATGCTGCGTGGCATTGCGTCGGGCATGAAGTACCTGTCTGACATGGGCTACGTCCACAGAGACCTGGCCGCCCGCAACATTCTGGTCAACAGCAACCTGGTGTGTAAGGTGTCTGACTTCGGCCTGTCCAGAGTCCTGGAGGACGACCCAGAGGCTGCTTACACCACGCGGggagGTAAGATCCCTATCAGGTGGACAGCTCCAGAAGCTATCTCCTACAGGAAGTTCACCTCGGCCAGCGACGCCTGGAGCTACGGCATCGTGCTCTGGGAAGTGATGTCATACGGGGAGCGGCCTTACTGGGAGATGTCCAATCAGGACGTTATCAAAGCAGTAGATGAGGGCTACAGACTGCCTCCTCCTATGGACTGTCCTGCTACTCTGTACCAGCTGATGTTGGACTGCTGGCAGAAGGAGAGGAACAACAGACCCAAGTTCGAACAGATCGTCAGCATCCTGGATAAACTCATTCGCAACCCTGGGAGCCTGAAGATCACAGCCAACACCTCACCCAGGCCAGCCAACCTGCTCCTGGACAGGAGTAGTTCCGAGGTGGTTCAGTCATTGGGAACAATGGGGGATTGGCTGGACAACGTGAGGACTCTGCCCTGTAAGGAGGCCTTCTCTGGGGTCAGCTACAGCTCCTGTGACACCCTGCCCAAGACCTCCGCAGAAATCTGTCTGACGGAGGTCCAGCACCACGTCACAGCAGCCACCTGCCCAGAGTGGGAGCCTTCAATGGGGATCACCaccctctaacccccccccctcctcctcctcccttcaaaCTCCAGAGACAACGGATGggACCTAAAGAAGGTTGGTGTGACTATCGTCGGCCCCCAGAAGAACATTGTGAGCAGCATCAAAGCACTAGAGAGCCACAGTAAGAACGCCCCTGTCCCAGTGTAACTCGACCGAGCCACTAGAgactggctgtctggctgactggctgcccTCTGGGCCCCGTTCCAATCTGAATGAAACCCCTCTGGGCCCTGTTCCAATCTGAATAAAGCCCCTCTGGGCGACGTTCCATTCTGAATGAAGACCCTCTGGGCTCCGTTCCAATATGATTTAAAGCGTCTCCCCTTCAGACCTCTGTGAACGTTTCAATGACGTTCCTTCCACAAGGGAGGCTTCCCTTTGCGAGGGGtagtgatggggagaggagggccTCATTGGATTAGAACAGCCCTCTGATCTCTCTAACATACAGGAAGGAAGTCCCAAACTAAAGGAGGAAGTAGACACTCCACACAAATGCTGAGATGCCTTActcagaacaggagaggagaggagagaacctGGCCTTGGACCTTGGGGCATGGCGATAAAGGGCTGGTGCTTGGATTGGATAACGTGGGACAGCAGGGCCCTTTATGTGACCTATAGTGGTAAGGGGCTCGTTGACAACTGATCCAATCGTGATCCTATGGACTTGACTGACAACTCTTTAACTCTGGAGAGGGGGACATTAAATGCCTTGAGTAGAATAATGCAGTCAGCAGCAGAAATTCACTCACATCAACCTGGAGCAGACAGAAGCAGACCTGGAGATTCATTCATGAACTTTGAGACGCTGGACTCCCACCACTGAagaccccactctctctcacagagAAGGACTGATaccactctgtgtgtctgtgtgtctgctccTGTGTGCTCCTTTGTTACTCAAGAGAAAGTCAGCTTGAGAAAGAAGCCAAACCATTGGATGGGCACCCAGACTACAATACGCCATGTTTCCCCTAGCTATAGCCTACAGTCTGAAAACAGTTGATGTCAAACAGAAAGCAATAATCACAACAATCAGTTTATCAGTTTGATCAACCAGAACCAATGAGACTCACACAGTTTGCTCTGATGGTTCACAGGACATATCAGACCACATACAGAACTGTAATTAACTGCCACAAGTCTGCTTATTATACAGTAGGTAATGATACATCACTCCAAGCTTCCTTATTCCTACCCCTAGTGTGAAATCTCAGTATGTGTTATTCATTCAAACTAAAGCAGgatagagagaaaaggagagatcgagagagagagagagaggtagaagtagagagagatgtggagggagagaggaatagagaaggaaatgcagagagacagacagagagagacagacagagaaagacagacagagagagagagagagaggtagagagagaatacctTGCAACCGACTACTCCGGAGCATATTCTGCTCTGTAAGGTAGATAGATGACACTCAATGACCCCGAGCTCTTCTAATGCCTTCTTCGAGCAGCGGTGGAGATCTCACAACTCTCTGGAAACAACGAGTGTGTGAGTGTAATACATCTCTGGAGCAGACAATGATTCTCTCTGGAAACAACGAGTGTGTGAGTGTAATACATCTCTGGAGCAGACAATGATTCTCTCTGGAAACAACGAGTGTGTGAGTGTAATACATCTCTGGAGCAGACAATTATTCTCTCTGGAAACAACGAGTGTGTGAGTGTAATACATCTCTGGAGCAGACAACGATTCTCTCTGGAAACAACGAGTGTGTGAGTGTAATACATCTCTGGAGCAGACAATGATTCTCTCTGGAAACAACGAGTGTGTGAGTGTAATACATCTCTGGAGCAGACAATGATTCTCTCTGGAAACAACGAGTGTGTGAGTGTAATACATCTCTGGAGCAGACAATGATTCTCTCTGGAAACAACGAGTGTGTGAGTGTAATACATCTCTGGAGCAGACAATGATTCTCTCTGGAAACAACGAGTGTGTGAGTGTAATACATCTCTGGTGCAGACAATGATTCTCTCTGGAAACAACGAGTGTGTGAGTGTAATACATCTCTGGAGCAGACAATGATTCTCTCTGATCTGAACAATGTTGCGTGTGGATGCGTGATAGCACCCCCCGTCTGTCCCCTGCCCGCCTGTTGCCCTTAGCTGCTGTTGTATGTTCTATTAGCATGTACATATGTAAACAACCATGTAACTATAGATACTAGCAGTACAGTCCCCTTCCATAGCCATCCCTTTGTACAAATGTTTCTATGTATAaaagaatgaacaaaaatatCTGTGCAACATTTTGAAAAGGCAAAAATTATTTGTATTATATTTGATGTTATTTTGTCTTATATTTGttttttacattaaaaaaagCAATTATAATAACCTATTATTTATTTGTTAACATATACAGTGCATAAGTGTAGTGTTTTGTTTGTAGCAGACAGTAGGATATAACATGGTTCTGTGACAGTGTCGTCAATGTTTTCTGTTTTCTTTACAATCATGAACATTTGGAAGAGCAATACTGTTAACCACCCCCTCCCTACTCTTTTAGCTTTCTTTAGATgaacgtgtgtgcgtgtgtatgtgtgtgcatgcaagcgtgtgtgtgtgtgtctctgtgcgtgcgtgtgtgtgtgtgtgcttgtgcaaaTGTAAAAGGCCTTGTCTACTAATGTTAAATGATTTGTAGTggaaacatttatatttttataataaacattcttaaaatattttTGAAAAAAGTAATGCAGATAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324336 lncRNA downstream 46763 64438685 ~ 64439026 (-) True G286071
TU324331 lncRNA downstream 51769 64433725 ~ 64434020 (-) True G286066
TU324112 lncRNA downstream 102351 64383134 ~ 64383438 (-) True G285863
TU324096 lncRNA downstream 113011 64372572 ~ 64372778 (-) True G285848
TU324094 lncRNA downstream 114349 64370708 ~ 64371440 (-) True G285846
TU324501 lncRNA upstream 70136 64711701 ~ 64712152 (-) True G286230
TU324509 lncRNA upstream 76845 64718410 ~ 64718766 (-) True G286238
TU324518 lncRNA upstream 90112 64731677 ~ 64731886 (-) True G286247
TU324524 lncRNA upstream 95354 64736919 ~ 64737209 (-) True G286253
TU324563 lncRNA upstream 128232 64769797 ~ 64770026 (-) True G286292
XM_036974914.1 mRNA downstream 311513 63911999 ~ 64174276 (-) True LOC110520380
XM_036964596.1 mRNA downstream 581571 63901468 ~ 63904218 (-) False LOC110505395
XM_036964597.1 mRNA downstream 581571 63901468 ~ 63904218 (-) True LOC110505395
XM_036964580.1 mRNA downstream 581575 63901468 ~ 63904214 (-) False LOC110505395
XM_036964595.1 mRNA downstream 581576 63901468 ~ 63904213 (-) False LOC110505395
XM_021597673.2 mRNA upstream 210938 64852503 ~ 64855851 (-) True LOC110520388
XM_021597667.2 mRNA upstream 220461 64862026 ~ 64883035 (-) False LOC110520386
XM_021597666.2 mRNA upstream 220461 64862026 ~ 64890987 (-) False LOC110520386
XM_036974918.1 mRNA upstream 220969 64862534 ~ 64890987 (-) True LOC110520386
XM_036965063.1 mRNA upstream 242773 64884338 ~ 64895983 (-) True LOC118944694
TU322065 other downstream 1770612 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 6896606 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 7082214 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 7188027 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 9074302 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 327984 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 372694 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 413135 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 413135 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 593615 65235180 ~ 65235908 (-) True G286953

Expression Profile