RNA id: XM_021597673.2


Basic Information

Item Value
RNA id XM_021597673.2
length 1692
RNA type mRNA
GC content 0.47
exon number 4
gene id LOC110520388
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64852503 ~ 64855851 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GAGGGATGCCGTGTTTCCTCCCGGACGTTCCCTTTGGTACCCTCGAGTGGTGGATGAAGGAAGTACAACCACAGCCATTGCAGGTGTTTACTGGGTTAAAAGTTGTATACTATCGTTTTAAATATGCCTGTATTGTCCGATACGGAGCGTAAGGGCTGTAAAAATATGTTGGGTATCATGTCAAGGGGCGACATACTTTCGCTTAGCGATACAGTCACCAACAAAATGATTGCAGTGGAAAACATTACAGAAGCAGTTGAGGCCATTCTTTCATACACCAAGGATACGGAGGAGCTGCTAAAACGAAAAAAGGTCCACCGTGACGTTATATTCAAGTACCTGGCAAAGGAGGGGGTGGTGATGCCCCCCAACAGTGAGAAACACCAGCTAGTGAAGCGGACTCTAGAGTTTTGGTCTACTGGGAAGGCATTGGACTATCAAACCCCAGCAGTTGAGACCAGCCTAAGTCTGAGACCAGCTGAGAGTGTCTCTGTTTCCTCTGAGGCAGGGTACAGTCCTGGTTTTGACCACCTGGCCTTGGCCAGACAGTTCTGTCAGTGGTTCTTCCAGCTTCTCAACAGTCAGAACCCCTCCCTGCGCCAGCCTCCTAAGGACTGGGGACCACAACACTTCTGGGAGGACGTCCGTCTGCGCCTCTTCTCCAGtgCTGTTGGCCAACAAATGGAAGAATTCCATGGCTCTGAGCTGACTAGCCTGCGTCTCCTGGCCCTGGCGAGGGACGAGAGGCTCCTGTTGAGCCCCAACCTTGACCCTCCTGGCCTGAAGGTCCTGTCCTCCCCCCACGGCCTGGTGTTGGTGGCTGTGGCAGGGACCATTCACAGAGATGATGTCTGCCTAGGAGTATATGAACAGGTGTTTGGCCTCATCCGCTCACCGCTGGAACAGAACAGCTGGAAGATCAAGTTTGTCAACCTGAAGATCAAGGGGCAGGACGCCCTGGGAGGAGCAGAGGAGCTGGCCTCTCCTGCACTGACCTGCAGCTCCTCTGAACTACAGCTGCTCTGCAGATGAGGGAACTGAGGTTCATCCCAATAGTCTAAAGGGGCTTCCTCTCCTTACTTCCTTTCCTTTATCTGCACTTGTGAAAAACATGGACAGGTGAAAGTAAATTGCCAATGTCACCATCCACCATTTTGTTTTCACCTATCTTGGGTTCTCAGGTCAGTGCAgataaaggagagaagaagagagagacacacttcAGATTATTGAAATTATTGAAATTCACACTTGGTGTCACTAAGAGAAGAGGACTGCTCTGTAGACCATAAGGGAGCAGTGGTTAGAGATGTGCCTGTGAGAATGAAAGACAAACATACATTTCATGGTCTGTTTTCCTCAATACTATATAGTTAGCTATTATTTACTGCTGTATCAAGAAGAAACATGTAACATTTTTGCTATTAATACTATATTCCAGGATATGTTTAGGTTTACTCTCCATGTAATGGGAAAAGTTCTTGGTTGGTGTAGGACTGGGTGGTTTTCACGATTCTTCTGTTCTCTCATTTGAGGCATTTTCCCTTAAATGACCTGTGATCTGTGCCTTATGTAGAATAGTCTATAAGCAGAAGCATGCCTCTATCATCGGTAACGGTATATGGCTAAAACTTTAAGTATATTATATTGTAAATATGTATCATACCAGTACTAAAAATAATTTAAACCTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU324710 lncRNA downstream 67652 64783433 ~ 64784851 (-) False G286426
TU324709 lncRNA downstream 67794 64784007 ~ 64784709 (-) True G286426
TU324708 lncRNA downstream 68694 64783433 ~ 64783809 (-) False G286426
TU324570 lncRNA downstream 74566 64777664 ~ 64777937 (-) True G286299
TU324563 lncRNA downstream 82477 64769797 ~ 64770026 (-) True G286292
TU324753 lncRNA upstream 35254 64891105 ~ 64928286 (-) True G286463
TU324817 lncRNA upstream 113384 64969235 ~ 64969459 (-) True G286520
TU324820 lncRNA upstream 115407 64971258 ~ 64971597 (-) True G286523
TU324833 lncRNA upstream 122395 64978246 ~ 64978524 (-) True G286536
TU324889 lncRNA upstream 131932 64987783 ~ 64995840 (-) True en1a
XM_036974916.1 mRNA downstream 210938 64485789 ~ 64641565 (-) False LOC110520379
XM_036974917.1 mRNA downstream 210938 64485789 ~ 64641565 (-) False LOC110520379
XM_036974914.1 mRNA downstream 678227 63911999 ~ 64174276 (-) True LOC110520380
XM_036964596.1 mRNA downstream 948285 63901468 ~ 63904218 (-) False LOC110505395
XM_036964597.1 mRNA downstream 948285 63901468 ~ 63904218 (-) True LOC110505395
XM_021597667.2 mRNA upstream 6175 64862026 ~ 64883035 (-) False LOC110520386
XM_021597666.2 mRNA upstream 6175 64862026 ~ 64890987 (-) False LOC110520386
XM_036974918.1 mRNA upstream 6683 64862534 ~ 64890987 (-) True LOC110520386
XM_036965063.1 mRNA upstream 28487 64884338 ~ 64895983 (-) True LOC118944694
XM_021597678.2 mRNA upstream 131902 64987753 ~ 64992151 (-) False en1a
TU322065 other downstream 2137326 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 7263320 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 7448928 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 7554741 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 9441016 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 113698 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 158408 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 198849 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 198849 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 379329 65235180 ~ 65235908 (-) True G286953

Expression Profile