RNA id: XM_021597862.2


Basic Information

Item Value
RNA id XM_021597862.2
length 953
RNA type mRNA
GC content 0.50
exon number 8
gene id LOC110520493
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 70057383 ~ 70070470 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggTGAACTGTTCTTTCTACTTTAAAATTGGTGCCTGCCGACATGGTGACCGGTGCTCCAGATTACATAATAAACCAACTTTCAGCCAGACCATCTTGATTCAAAACATCTACCGTAATCCCCAAAACAGTGCGCAGACGGCCGACGGCTCCCACTACCATTGCCCTCTTGAACATTTACCGTAACCCTCAAAACACTGCCCAGTCTGCCGATGGTTTGCGCTGTGCCATCAGTGATGTGGAGATGCAGGAGCACTACGATGAGTTCTTTGAGGAGGTCTtcacagagatggaggagaagtacggagaggtggaggagatgaATGTGTGCGACAACCTGGGAGACCATCTGGTTGGAAACGTATACCTGAAGTTTCATCGTGAGGAAGACGCGGAGAAGGCCGTGATGGATCTGAATAACCGTTGGTTCAACGGTCAACCAATCCACGCCGAGCTCTCTCCCGTTACAGACTTCAGAGAAGCCTGCTGCCGCCGGTACGAGATGGGGGAGTGCACTCGAGGAGGCTTCTGTAACTTCATGCACCTGAAACCCATCTCCAGGCAGCTGAGGGAGCTGTACGGTCGCCGCAGGAAGAAGGGaggGGGCCATCGTTCTCGCTCCCGTTCCAGGGAACGCCGTTCTCGCTCGAGGGATAGAGGCAGGGGAGGCGGACGTGACCGCGAGAGAAGGCGTTCCAGAGAACGCTCTGGCAGGTTCTAAACCAAGCCACCACTTCACGTGCATCCCTTCCATCTCCATTATCATTCTGCATCATCCTCAAATCCATATCTTTCCCTCCATTGCTGCCTTTTCAATTCCCTGTTGGCCCTTTCATATTGTCCCAATGACTAAAATTAATTGGAAAATGTTGGACTTgttattttccttttttttatCATTTTTATTCAAGAAATGTAAAGCTTGCCttctcaataaaaaaaaaaaagtaaacct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330526 lncRNA upstream 25650 70032001 ~ 70034765 (+) False LOC110520491
TU331075 lncRNA downstream 26323 70096793 ~ 70096999 (+) True G291960
TU331076 lncRNA downstream 26902 70097372 ~ 70097582 (+) True G291961
TU331086 lncRNA downstream 33704 70104174 ~ 70104373 (+) True G291971
TU331111 lncRNA downstream 50876 70121346 ~ 70122502 (+) True G291995
TU331123 lncRNA downstream 71712 70142182 ~ 70142708 (+) True G292005
XM_036975046.1 mRNA upstream 25658 69980268 ~ 70034757 (+) False LOC110520491
XM_036975047.1 mRNA upstream 25658 69980271 ~ 70034757 (+) False LOC110520491
XM_021583366.2 mRNA upstream 136608 69915810 ~ 69923807 (+) False LOC110504602
XM_021597834.2 mRNA upstream 190203 69862032 ~ 69870212 (+) False LOC110520485
XM_021597866.2 mRNA downstream 2334 70072804 ~ 70092807 (+) True LOC110520495
XM_036975051.1 mRNA downstream 161085 70231555 ~ 70251197 (+) False LOC110518747
XM_036975052.1 mRNA downstream 161085 70231555 ~ 70251197 (+) False LOC110518747
XM_036975050.1 mRNA downstream 161086 70231556 ~ 70251197 (+) False LOC110518747
XM_036975049.1 mRNA downstream 161087 70231557 ~ 70251197 (+) False LOC110518747
TU330474 other upstream 108247 69949667 ~ 69952168 (+) True G291461
TU330486 other upstream 138296 69919182 ~ 69922119 (+) True LOC110504602
TU330385 other upstream 190203 69862060 ~ 69870212 (+) True LOC110520485
TU330321 other upstream 364579 69695395 ~ 69695836 (+) True G291327
TU330151 other upstream 430046 69626343 ~ 69630369 (+) True LOC110520478
TU331609 other downstream 506648 70577118 ~ 70581089 (+) False LOC110520507
TU331610 other downstream 506648 70577118 ~ 70581089 (+) False LOC110520507
TU331619 other downstream 506648 70577118 ~ 70581089 (+) False LOC110520507
TU332513 other downstream 1295713 71366183 ~ 71366423 (+) True G293204
TU332454 other downstream 1385971 71456441 ~ 71477947 (+) False il1rapl1a

Expression Profile