RNA id: TU330151


Basic Information

Item Value
RNA id TU330151
length 1342
RNA type TUCP
GC content 0.54
exon number 2
gene id LOC110520478
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69625755 ~ 69635303 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

tccttgggatgtccctacctTAAACTCTAACCCTACCTTAACCATTTTGCATTTCAACTTCAAAGGGGGTAGTGACGTCCCAAGGATTCCGGATATCAATGACCGTTTATGTTGCGGTACTCGAGTGTATGGTGGGGGCCCATAATCAGTTTTGCAGACACTAATCTCCATTGTATGAAAGTGCATTGTCTGAAAAACAACATCTGGCTGCTGAATGTGCACCATCCATGTCCAGGTAAAATGTTACCTGTTACCTAGCCTTTCTTAATCAGGCTGTGAATGTCGAGGTTTGATACAGGttcctgctgctagctagctagtcttGTTCACCAGCTGACTTGGTAACATTTCTTGGTGTTCTGACCGTACTGCATGCTTTAAAAGATAAATTACGCATCAGTTGTTCTCGCACCTGATAATTATGCTCGCCAATTCAACACGGGGCTTTCTCTGGTCGGATGTCGAAACCAGAACCTTGCTGAATATTTGGGGGGAGCGGGACATCCAGACGGCGTTGGGCGGAAACTTCCGAAACAGTCATGTCTACCGCGACGTCGCCCGGAGGTTGGGAATTATGGGGTTCGAAAGAACCCCAGAGCAGTGTAGGGTGCGAATCAAAAGCCTGAAAAGGCAGTTTATCCTGGCCAAGGAGGGCAACCTGAGGAACAACGGACAATACCACAAAATCTGCAAGTTCTACGATGCCATGGAGACGATACTAAACTGCCGTCCCCAGATTGACCCCCAGGAGTTGTTAGACAGTGGGGCCGTGGGGGATGAGACCGAGGAGGAAGTGGACACAGACCCTCCACAGGACCCATACTTGGAGAGCACAGGGGAAAGCTCCTACCCAGAAACCCAAGTGAAGCTCGAATACCCTCCCATCCCTGTGACAGTGGGAAATAGCACTACAGTCAGACAGATCAGCAGCCAGTCAGCTGGTGGGCCATCCTCCAAGCGGCCCAAGAAGCGGCACGCCGACCTGGCCCTGGACAGTGTGACGAAGCGCCTCCTGGAGCAAAGTGCCGAGGCTGAGCAGAGCTTCTACCAGATGGAGGAGCAGCGTCTGCAGGCCGAGGACCACCGGCGAGAAGCCAAACATGCCCGTGAGCTCCACATGCTCCAGGTGTTGGGACAGATGTTTTCCAGCATCGCCACCAGGAACCCTGTCGCCACAGCTACCCCAAACACAGCAATGCCGCCTGCTCTGAATACCATGGAGTCCACCATGCAGCCAGGTGTGCCCATGTCCGCCTCTGGCCAAATGAGGCGTGGTCGGTCGAGTCACCGCCGAGTCCGCTCGCCCCAGTCCCAGGCTGAGTGGCCCAGCTACCACAGTCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU330267 lncRNA upstream 89085 69534421 ~ 69537258 (+) True G291274
TU330249 lncRNA upstream 118865 69499548 ~ 69507478 (+) False G291261
TU330252 lncRNA upstream 118865 69503869 ~ 69507478 (+) True G291261
TU330168 lncRNA upstream 308158 69317897 ~ 69318185 (+) True G291182
TU330164 lncRNA upstream 314525 69311606 ~ 69311818 (+) True G291178
TU330320 lncRNA downstream 63646 69694015 ~ 69694249 (+) True G291326
TU330330 lncRNA downstream 69379 69699748 ~ 69701720 (+) False G291331
TU330329 lncRNA downstream 70983 69701352 ~ 69701720 (+) True G291331
TU330353 lncRNA downstream 89639 69720008 ~ 69720786 (+) True G291345
TU330361 lncRNA downstream 110169 69740538 ~ 69740934 (+) True G291353
XM_036975025.1 mRNA upstream 30545 69469776 ~ 69595798 (+) False LOC110520475
XM_036975026.1 mRNA upstream 30545 69469776 ~ 69595798 (+) True LOC110520475
XM_036975024.1 mRNA upstream 459951 68942535 ~ 69166392 (+) False LOC110504559
XM_036965140.1 mRNA upstream 767606 68854772 ~ 68858737 (+) False LOC110504548
XM_021597815.2 mRNA upstream 776028 68846508 ~ 68850315 (+) True LOC110520472
XM_021597825.2 mRNA downstream 4211 69634580 ~ 69640723 (+) False LOC110520479
XM_021597826.2 mRNA downstream 4481 69634850 ~ 69640723 (+) True LOC110520479
LOC118964360 mRNA downstream 46141 69676510 ~ 69676663 (+) True LOC118964360
XM_036965146.1 mRNA downstream 81979 69712348 ~ 69731657 (+) True LOC110504569
XM_036975033.1 mRNA downstream 101390 69731759 ~ 69769646 (+) True LOC110504579
TU328723 other upstream 1401037 68223725 ~ 68225306 (+) False G289883
TU328273 other upstream 1863920 67761737 ~ 67762423 (+) True G289517
TU328233 other upstream 1944221 67678862 ~ 67682122 (+) False G289486
TU328193 other upstream 1994133 67625353 ~ 67632210 (+) False G289455
TU328195 other upstream 1994133 67625353 ~ 67632210 (+) True G289455
TU330321 other downstream 65026 69695395 ~ 69695836 (+) True G291327
TU330385 other downstream 231691 69862060 ~ 69870212 (+) True LOC110520485
TU330486 other downstream 288813 69919182 ~ 69922119 (+) True LOC110504602
TU330474 other downstream 319298 69949667 ~ 69952168 (+) True G291461
TU330553 other downstream 427171 70057540 ~ 70070357 (+) True LOC110520493

Expression Profile