RNA id: TU330329



Basic Information


Item Value
RNA id TU330329
length 285
lncRNA type intronic
GC content 0.40
exon number 2
gene id G291331
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69699748 ~ 69701720 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


TGAGGTTAGTTAGAGCTCAACTACCAGTACTATACAGAGTGATGAGGTTAGAGCTCAACTACCAGTACTATACAGAGTGATGAGGTTAGTTAGAGCTCAACTACCAGTACTATACAGAGTGATGAGGTTAGTTAGAGCTCAACTACCAGTACTATACAGAGTGATGGGGTTAGTTAGAGCTCAACTACCAGTACTATACAGAGTAATGTGGTTAGTTAGAGCTCAACTACCAGTACTATACAGAGTAATGTGGTTAGTTAGAGCTCAACTACCAGTACTATACAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU330320 lncRNA upstream 7103 69694015 ~ 69694249 (+) True G291326
TU330148 lncRNA upstream 59322 69563664 ~ 69642030 (+) True G291163
TU330267 lncRNA upstream 164094 69534421 ~ 69537258 (+) True G291274
TU330249 lncRNA upstream 193874 69499548 ~ 69507478 (+) False G291261
TU330353 lncRNA downstream 18288 69720008 ~ 69720786 (+) True G291345
TU330361 lncRNA downstream 38818 69740538 ~ 69740934 (+) True G291353
TU330362 lncRNA downstream 39260 69740980 ~ 69741802 (+) True G291354
TU330364 lncRNA downstream 42524 69744244 ~ 69744512 (+) True G291356
TU330365 lncRNA downstream 43471 69745191 ~ 69745409 (+) True G291357
LOC118964360 mRNA upstream 24689 69676510 ~ 69676663 (+) True LOC118964360
XM_021597825.2 mRNA upstream 60629 69634580 ~ 69640723 (+) False LOC110520479
XM_021597826.2 mRNA upstream 60629 69634850 ~ 69640723 (+) True LOC110520479
XM_036975028.1 mRNA upstream 66049 69625762 ~ 69635303 (+) False LOC110520478
XM_036965146.1 mRNA downstream 10628 69712348 ~ 69731657 (+) True LOC110504569
XM_036975033.1 mRNA downstream 30039 69731759 ~ 69769646 (+) True LOC110504579
XM_021597835.2 mRNA downstream 160174 69861894 ~ 69870212 (+) False LOC110520485
XM_036975041.1 mRNA downstream 160302 69862022 ~ 69867869 (+) False LOC110520485
XM_021597836.2 mRNA downstream 160302 69862022 ~ 69870212 (+) False LOC110520485
TU330321 other upstream 5516 69695395 ~ 69695836 (+) True G291327
TU330151 other upstream 70983 69626343 ~ 69630369 (+) True LOC110520478
TU328723 other upstream 1476046 68223725 ~ 68225306 (+) False G289883
TU328273 other upstream 1938929 67761737 ~ 67762423 (+) True G289517
TU328233 other upstream 2019230 67678862 ~ 67682122 (+) False G289486
TU330385 other downstream 160340 69862060 ~ 69870212 (+) True LOC110520485
TU330486 other downstream 217462 69919182 ~ 69922119 (+) True LOC110504602
TU330474 other downstream 247947 69949667 ~ 69952168 (+) True G291461
TU330553 other downstream 355820 70057540 ~ 70070357 (+) True LOC110520493
TU331609 other downstream 875398 70577118 ~ 70581089 (+) False LOC110520507

Expression Profile