LOC110504569 (rpgr)


Basic Information

Item Value
gene id LOC110504569
gene name rpgr
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 69712348 ~ 69731657 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036965146.1
CTGCATAATCGAATCCGCAGATTGTTTCTGCGGAGGAATGTGACAGGCACCTGTGAGGTGAGCCGACACCAGGGGAGAGATGACCGGGCAGACGGAAGATGATATACCTGAAACAGGAGCAATCTTCACCTTTGGGAAGAGCAAGTTTGCTGATAATGTGCCCAGTAAATTCTGGCTGAAGAATGACCATCCAGAAGAAATCTCGTGTGGGGGTGATCACTCTGCTGTCGTAACAGGCCATAGCAGGCTGTTCATGTTTGGAAGTAATACCTGTGGTCAGTTAGGGCTGGGGTCAGAGGTCAACATCAACAAGCCCACTGCTGTGAAAGtTTTGAAGACTGAAAAAGTGAAGTTTGCAGCATGTGGAAGAGACCACACAATCGTGTGCACATGGAGTGGGCAGGTTTATGGTGCTGGCAGTAACCAGGAGGGGCAGCTTGGTTTGGGACACTGTGATGACACAAACACCTTCCACCTGATTCATCCCTTCTCTGACCACGCACCAATCAAAATGCTCGCTGCTGGCTGCAACACCTCAGCTGCTCTGACAGAGGAAGGCAGGCTGTTCATGTGGGGTGATAACTCGGTTGGCCAGATCGGTCTGGGGGCAGAGAGCTACGCCTCAGAGCCTAGAGAGGTGATGGTGGGGCAGTCAGTGGCCTGGGTGTCCTGTGGATACCACCACTCAGCGTTCGTCACAGTGGACGGGGACCTCTACACGTTTGGGGAGTGTCGGAACGGAAGGCTGGGTCTATTCCATGACCAGCTGGCCAATCACAGAGTCCCTCAGCAGGTGGAAGGCATCCAGGATCCGGTCATCCAAGTGGCCTGTGGAGGGGAGCACACAGTGGCACTCACAAAGGAGGATGTGTACACGTTTGGGCGGGGTCAGCATGGTCAGCTGGGCCACGGGACCTTCCTGTTCGAAGCACATCTGCCCAAAGCACTGGTCCACTTCCGGAACGGCAGAGTCAGTCACGTCACCTGTGGAGAGAACCACACTGCTGTGATCACAGACAGTGGGATTCTGTACACCTTTGGGGACGGTCGCCATGGTAAACTAGGACTGGGGGAAGAGAACTTCACCAACCAGTTCAGACCAACACTGTGCCCACGCTTCCTCAAATACAGTGTCCAGTCAGTGGCAGGTGGCAGCTCTCACATGCTGGTGCTGGCTATGCCCAGACCCCCAGAGGTTGAGGAAGTGGTGATAGAGGAAGATGACGTCACAGAGACCATTCTGGAGACTCTGGAAACCTACACTGAGCTGCTCATGATGGATCCCTCCCTCCTCATGTCCAACCCACCGACTGCACCTCCTCTCTGGACCCTGTCTGCTAGGGCCCGCCGCAGGGAGAGGGAGTGTTCTCCAGAGCAGTTTGGCCAGATGTTCCGTAACCTTCCTCCTCTGATGTCTGGCTTCTTCAACACCTCCCTTCCCGTGTCCAGGAACATCCGCATCTCCAGAACACCATGGAAagacccctccacctcctcactgTCTTCCAATCCCTCCTCAAACAATGcccccagtccctctctgtcactcaaaCCCAGAGGCAAACCCCCTTTAACACCATCACGGTCACCCCAATTCACATTCCCAGACCGTCCCAGCCCTTCACTCTCCTCAAAGTCCAGCCCTAAGAAGAAGAAGCCCACCCAGTCAAAATCACCAAAATCTACATCTAAAGAATCCAGTAGCCCCTCACAGTCCTTCATATCCATGCCTAAACTCATCCCCGACCCCACACTGTCCCCTAAAACCCCCTTTAAGAAGCCCACAGATTACAACCAATCCCCCAAAACGCTGTCTAAGGGGCACCCCAGCCCTTCTCGGAGTCCCACCTCACCACAGACAGATAGGAACGAGGACACAGTGACAGAAGCCCCTGACAGCCTGATGCTCATTGAGAATATGGAGGATGAAAAGGACACGTTGTCAAACCTGGTATCACTATCGAGAGGAGATTCTGGCAATGAGACTGGGACTACATCTGCAGAGCACAAGGATAAGGGACATAAAAAGGGTAGGGTTCTTTGGAGAGCTgtgaaggaggcagagaggaaggtTGAACAAACCCTGACCAACAGGAAGGAGGAGCTACCTTCCCATGAAGCCCTTCCCACCGAGCTCCAGAGAGGTTCCAGTTTGAATTTGTTGAAGGCAGAGGCCAAGCCCACAAAGAGTCCCAAACCACTAAAGACCCCTCAGACCCCCCAAACCCCAGCCAGGGGCAAGGAGAACATCACTTTGACATCAGAAAAGGCTGGCCTTAAAGTGAAAACCAGTAAACTAGAGAGCAATCTTCAAAGTACAGGTAAAGCAGAGGCTAAGCTAAATACACCTGCAAGGAAACAAAGCAAGTTATCTGTATCGAAACCTAGCACTCCTAAACACAGTCAGATCCAGATATCTGTGTCTAAACCCAGCACTCCAAAGCATGGTCAAAGCAAGCTGTCTGAGGTGAATAAAGGTACAGAGATGAAAGGTAAAGGCCCTGTAAAGATCAGAAGTAAGGAGACCGAGGCGACCAGCACTCCCATCAAAACGAAAAGTTTGGAGTCCAAAGACAAGAAATCAAAAATTGCAGAGGAAGATACTAAAACTATTGAAGTTCAAAATAAACCACTTCAAGGGGTCAAGTCCGCTCCAGTCAAAGTTAAAGGTAAACAATTAGAGGTCAAATCCACCCCTGTGAAAAGTAACATTCAAGAGGCCAAATCCTCTACAGTCAAAGTTAAAGGTCAACCTGTGGAAAAGGAGCCAATTCCAAGTAAAACTGTGGCTGAAAGCACTCCTTTGAATGTAAAGAGGATTCCTCAGGAGGTATTAGATAaaacatctgaaggtaaaatCACTCCAATAAAGGGACAAAGGAAGACAAAAGAGGTGAATGAACAAAAGACTGGAGAGTCTATTACTCTCAAAGAGTCAGGGAAAACAGAGGGGAAGAAAATGGCAGTTAAAGATAAAGGCAAAGTCACAGAAACAAAAAGTGCATCCATCAAAACAAAACATGTGCCTGAACCTGAAGAGGTTAAAGCTAAATTAACTGAGTTGAATGGAACCCCGGTGAAACTGAAAAGCAAGCCAACAGAGGTTTCCAGCCAACCAATCTTAGTAGAACCTACCTCAAAGGCCAAATCACCATCCGCATCACTGTCATTATCAGATGCAATGCCTCAAAATGCTTGGGATAAGAAGTCAGCGAAGTCTGAGCTTAGAGAGCCACTGGCTGTCTCACAGGTCAAAGATAGAGTGGAGGTCCCAGGGGAAGATACCATTGGTGAATCCCAGGAGGGGGAGCCTGGCTGGGGAGGATTTCTCAGCGATGCAGCCTCTCTCCTTCCAGCCGTGGGGGTGGCAGGCGTAGCCATGGGGGTCTTGAGTGAGGCGGTGACAAGTGTGAGGGGGTTTCAGTCAGAGAGTGACACAGCCACTTCTATCCCTCCTCGGCGGTCCAGCCGGGTAGAGAGGTTCACCAAACAGAGCGCCATCACCCAGCCTTCCGCCTCCTCCTCTTCAACATCAGATCCCAGTGCAGTAGCGCAAACAAACAGGACCTCCATCTGCATCAGTGTTCTCAGGAATTCTGATCAGGAAGCAGGGAGCAGGAGTTCTGAGAAGAACCCAGACACCACAGAGGATGCTAGTGACAGGTCGGGAGGTCAGGCCGAGGTTGACGACAATGAGAACACTAgtagaggtcaaaggtcagaggaTGAGGATGATGAACATGAAGATTTcacaaagagacagggagaggaggatgacagGAGTAGTGAGGGtctggaagaagaagaggaggaagaggatgacagGAGTAGTAAGGGACTGGAAGAGAGCAGTGAACAGAACGAAGGGGGAGAAGCAGAAGACAGTGATTCTGTggctagcagagaaggagaggaggatagagaagagaagagtgaaGAGAGCCAGGGTGCGGAGGGGGAGGAGAGCAAAGAGAGTGAttctgaggggagaggagaggaggaggagagcaaaGAGAGTGATTctgaggggacaggagagggggaggagagcaaAGAGAGTGATTctgaggggacaggagagggggaggagagcaaAGAGAGTGATTCtcaggggacaggagagggggaggagagcaaAGAGAGTGATTCtcaggggacaggagagggtgaggagagcaaAGAGAGTGATTCtcaggggacaggagagggggaggagagcaaAGAGAGTGATTctgaggggacaggagagggggaggagagcaaAGAGAGTGATTctgaggggacaggagagggggaggagagcaaAGAGAGTGATTctgaggggacaggagagggggaggagagcaaAGAGAGTGATTctgaggggacaggagagggggaggagagcaaAGAGAGTGATTctgaggggacaggagagggggaggagagcaaAGAGAGTGATTctgaggggacaggagagggggaggagagtaaAGAGAGTGATTCTGAGGCAAgcctagaggaggagggagaggagaaaagtgaagagagtgatggggaaggagaggaggcagagagtggTTCTGGGACaagtggagagggggaagaggaggataaGAGTGAAGAAGAGTCCAGTGATGAAGAGATTGGGGATGAAAACaaagaggacaaggaggagggtGGTGATGAATCAGGAAGTGAGGCTGAGAGCAAGAGTGAGGGATCagcagaagaggaggaagatgaacaAGCAGAAGAAGCAGAGAGTGAAGAAAGTAAAGCTACTgagtcaggagaggaggaaggagagggagggagtggaacagatgaggaaggagagggagaggataagGAAGGTTGTGAaagtgaagaagaggaggaggaggcaagtgtaagtgaggaggagggagaagaggatgaCGATGAGGAAAATGGAGCAGAAAGTGGAGAAGGTGAGGGCAAtgtaggagaagaagaagaggaagcagTTGAGggtgaggaagaagaggatgaaaaTGAAGGTGAAGAGGAGAACGGTGAAGTCGAAGAGggcgaggaggaagaggagggaggagaggaagaggaggaatatGCTAGTGGAGAGGAGGAACTTGAAGATGAAAaatgtgaggaagaggagggagaagaagaagatgagggGGAAGAAGAAGATGAtaaaggagaaggggaggagggagaaggggaagaggaggaagatggtgAAAAACAGGAAGATGAGAAAGAGGAAATAGAAGTGAGAGAGGAGGAAGCGAACAAACAAGAAGAGGAAAGGGAGAagcaagaggaggaagagaaggaagaagaaAAAGATAGACAGGAAGTAGGTGGaaaagacacagagggagaggagggtggaaaaaggggggaggagaagggaggtgaAAAAGAatggaaagaaaataaagaaattgATGGTGAATTAGAAGAAGAAGCTGCAGGGGAACAGAAAGgggagatggaggtggaggaaacgggagaggaagaagatgaagaggaaggagaagaagaggaggaagaagatgagggagaggaagagaaagatagtaaagaaggagaagaggACAAGGAGCACTTTAACACCTTTATGTGGAGACACCCCTAA

Function

symbol description
rpgr Enables RNA binding activity. Involved in cilium assembly and visual perception. Located in Golgi apparatus; centrosome; and photoreceptor outer segment. Implicated in X-linked atrophic macular degeneration; X-linked cone-rod dystrophy 1; X-linked retinitis pigmentosa and sinorespiratory infections; retinitis pigmentosa; and retinitis pigmentosa 3.

NR:

description
X-linked retinitis pigmentosa GTPase regulator

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036965146.1 True 5602 mRNA 0.51 15 69712348 69731657

Neighbor

gene id symbol gene type direction distance location
LOC118964360 NA coding upstream 35685 69676510 ~ 69676663 (+)
LOC110520479 LOC106586674 coding upstream 71625 69634580 ~ 69640723 (+)
LOC110520478 LOC106586673 coding upstream 77045 69625755 ~ 69635303 (+)
LOC110520475 LOC106586671 coding upstream 116550 69469776 ~ 69595798 (+)
LOC110504559 LOC106586663 coding upstream 545956 68942535 ~ 69172271 (+)
LOC110504579 LOC106582139 coding downstream 102 69731759 ~ 69769646 (+)
LOC110520485 dynlt3 coding downstream 130237 69861894 ~ 69870212 (+)
LOC110504602 LOC106586683 coding downstream 184153 69915810 ~ 69923807 (+)
LOC110520491 LOC106586687 coding downstream 248611 69980268 ~ 70034765 (+)
LOC110520493 LOC106586690 coding downstream 325726 70057383 ~ 70070470 (+)
G291331 NA non-coding upstream 10628 69699748 ~ 69701720 (+)
G291326 NA non-coding upstream 18099 69694015 ~ 69694249 (+)
G291163 NA non-coding upstream 70318 69563664 ~ 69642030 (+)
G291274 NA non-coding upstream 175090 69534421 ~ 69537258 (+)
G291261 NA non-coding upstream 204870 69499548 ~ 69507478 (+)
G291353 NA non-coding downstream 8881 69740538 ~ 69740934 (+)
G291354 NA non-coding downstream 9323 69740980 ~ 69741802 (+)
G291356 NA non-coding downstream 12587 69744244 ~ 69744512 (+)
G291357 NA non-coding downstream 13534 69745191 ~ 69745409 (+)
G291362 NA non-coding downstream 21182 69752839 ~ 69753077 (+)
G291327 NA other upstream 16512 69695395 ~ 69695836 (+)
G289883 NA other upstream 1487042 68223725 ~ 68225306 (+)
G289517 NA other upstream 1949925 67761737 ~ 67762423 (+)
G289486 NA other upstream 2030226 67678862 ~ 67682122 (+)
G291461 NA other downstream 218010 69949667 ~ 69952168 (+)
LOC110520507 senp7 other downstream 845461 70576887 ~ 70597458 (+)

Expression


Co-expression Network