RNA id: TU328195


Basic Information

Item Value
RNA id TU328195
length 922
RNA type TUCP
GC content 0.45
exon number 2
gene id G289455
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 67625353 ~ 67632210 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTACACTGAGCAAAATTATCTAGTGGCCACTCCAGAACGAAGGAAAGCACACCAGCTGTGCCATGTAAATCTGTTAACCCTATTATGCACGTTCCTCTGAGACTGAACAGTGGGATTCTGCAGAGGACGCTAAACCTGTTCTTTTGGCTGATACCGTTGTTTCCTTGGGTTCTTGTCGTGCTAGATCTGTGCATGAGGAGGAAGATGTTCCTGGTCCTGACGATTGTATATTGCAGGGTAGATTGAAAAATTCAGAAACACTGGATATCTTAGACAGTCTTCTCACTCACCTACCTGTTGATGGGCGGAAAGAGATGGTTGGTCTGATTCAGAGATTTCCAGGTTTGTTTTCTGATACACCTACACGTACAAACTTAATGGAACATGATATTGACATTGGAGATGCTGACCCCATTCGTCAGCGGTTCTATAGAGTTTCTTCAGAGAAACTACGTTGTCTGGATGCTGAGGTCAAGTACATGCTGGAGAGTAAGATAGCAGAGCCTTCTTTCTCCAGTTGGGCTTCTCCCTGTATCTTGGTCAGTAAACCGGATGGAACAAACGGATTTTGTACGGACTACTGTAAGGTAAACAGTGTCACAAAGCCAGATTCATTTCCTCTTCCTAGGATGGAGGACTGTGTTGATCAAGTCGGTGCAGCTAAGTTTGTGAGCAAATTTGACCTGTTAAAAGGCTATTGGCAGGTGCCACTGACGACTAGGGCACGTGAAATCTCTGCCTTTATTACACCCGTTGGTCTGTACTCATATTCGGTTATGAGTTTCGGTCTGCGTAATGCACCTGCGACTTTTCAGCGACTTATGAACAGGGTTGTCGCCGGTCTGACCGGGTGCGCTGTTTATTTGGACGATGTAGTGATGTATGCAGATACTTGGGAAGAACATCTGTCCCGTATTCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU328157 lncRNA upstream 28751 67596398 ~ 67596602 (+) True G289428
TU327838 lncRNA upstream 79424 67545611 ~ 67545929 (+) True G289156
TU327835 lncRNA upstream 81935 67543219 ~ 67543418 (+) True G289153
TU327823 lncRNA upstream 92702 67529103 ~ 67532651 (+) True G289142
TU328200 lncRNA downstream 4835 67637045 ~ 67690460 (+) True G289459
TU328219 lncRNA downstream 28643 67660853 ~ 67664209 (+) True G289476
TU328236 lncRNA downstream 46652 67678862 ~ 67682122 (+) True G289486
TU328179 lncRNA downstream 95079 67727289 ~ 67733804 (+) False LOC118936465
TU328180 lncRNA downstream 95079 67727289 ~ 67728439 (+) True LOC118936465
XM_036975008.1 mRNA upstream 22121 67599901 ~ 67603232 (+) True LOC110504522
XR_005051361.1 mRNA upstream 102636 67521558 ~ 67522717 (+) False LOC118964316
XR_002470759.2 mRNA upstream 105191 67519370 ~ 67520162 (+) False LOC110505416
XM_036975005.1 mRNA upstream 121129 67461512 ~ 67504224 (+) False LOC110520450
XM_036965127.1 mRNA downstream 94683 67726893 ~ 67734046 (+) False LOC118936465
XR_002472983.2 mRNA downstream 249206 67881416 ~ 67886396 (+) False LOC110520459
XR_002472984.2 mRNA downstream 249206 67881416 ~ 67886396 (+) False LOC110520459
XR_005051362.1 mRNA downstream 249207 67881417 ~ 67887339 (+) False LOC110520459
XR_002472982.2 mRNA downstream 249209 67881419 ~ 67886396 (+) False LOC110520459
TU327812 other upstream 105383 67519326 ~ 67519970 (+) True LOC110505416
TU327792 other upstream 146424 67474973 ~ 67478929 (+) True G289116
TU327715 other upstream 215803 67407322 ~ 67409550 (+) True LOC110520448
TU327725 other upstream 221987 67397957 ~ 67403366 (+) False LOC110520448
TU327305 other upstream 631222 66993171 ~ 66994131 (+) True G288674
TU328233 other downstream 46652 67678862 ~ 67682122 (+) False G289486
TU328273 other downstream 129527 67761737 ~ 67762423 (+) True G289517
TU328723 other downstream 591515 68223725 ~ 68225306 (+) False G289883
TU330151 other downstream 1994133 69626343 ~ 69630369 (+) True LOC110520478
TU330321 other downstream 2063185 69695395 ~ 69695836 (+) True G291327