RNA id: TCONS_00002971


Basic Information

Item Value
RNA id TCONS_00002971
length 838
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id XLOC_001416
representative True

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 43130890 ~ 43155453 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGCTCAAGGTTTAAGCGTTTTCTTTACATAAACCGTCAAAtttgttgattgtttgtttataGTGATTGAGTCTGTGAGCTTTTATCGGAGCTTGACAGATTTGGATTAAAACGAAACGAACAAAATGGGGATCCAAACGTAACTGTCGAATCCCTGGAGAAATCGACGACCCCCATGGGAGTCTGGCTAATGGGACTCACCGGTACCAATACTTCCTTTCCACAAACCCATCTCTAGAGTGGCAGCCGGTAAAGAAGACAGTGCCGAATGTGAAGTATGTCCCCGCGGGAGAAGGTCATAATGACAGCGAAAGCCATTGATCTGCAATTAGAAAGTACCTCTGGCCATCTCATTTCAAGTTTCTTCATATGTTTGTATGAAATGGAAATCATAAAATGTCATATTGCCGTTGCATAACACGCACACTTAATCTCAGTTAACATTTCCTGCAATTACATCACATCCTATTTTAATTAGAAGCTCAAGCCTTGTGCTGCACACTAGAACAAAACTGAATTTCAAACTTCAagggattttttttctccccctggTGTCTGACAGTTTTGAAATTAGTCAGCATGCAATCTATGTTTAAAACTCAGAGTGTTTATCTGGACAGGATGCTGTCATATCtctaaataaattattgttaGTGGGATTAAGGGTATTTACATTCATAAATGACTTATGTTCTTTTCAAGGTCCACAGTTTTCATTTTATCATCTCTTAAAGGACCGACATTATGATTGTTTAATCCTTTTAAAGTGTAACGTCATATGGTAAAGTATGTATTCATGGAGTAGATCAGGCATGTGGATGTTCACATTCTGTTGGAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003461 lncRNA downstream 841029 42286521 ~ 42289861 (-) False XLOC_001413
TCONS_00002316 lncRNA downstream 841146 42288236 ~ 42289744 (-) True XLOC_001413
TCONS_00003460 lncRNA downstream 1254113 41874937 ~ 41876777 (-) True XLOC_001410
TCONS_00002312 lncRNA downstream 1313109 41793301 ~ 41817781 (-) True XLOC_001409
TCONS_00003459 lncRNA downstream 1369728 41757056 ~ 41761162 (-) True XLOC_001408
TCONS_00003462 lncRNA upstream 362756 43518209 ~ 43540087 (-) False XLOC_001417
TCONS_00003463 lncRNA upstream 362756 43518209 ~ 43617169 (-) False XLOC_001417
TCONS_00002972 lncRNA upstream 362902 43518355 ~ 43615138 (-) True XLOC_001417
TCONS_00002321 lncRNA upstream 517216 43672669 ~ 43684583 (-) True XLOC_001418
TCONS_00002326 lncRNA upstream 558847 43714300 ~ 43722317 (-) False XLOC_001419
TCONS_00002317 mRNA downstream 351815 42776553 ~ 42779075 (-) False XLOC_001414
TCONS_00002318 mRNA downstream 352380 42776942 ~ 42778510 (-) True XLOC_001414
TCONS_00002315 mRNA downstream 841186 42281308 ~ 42289704 (-) False XLOC_001413
TCONS_00002313 mRNA downstream 1148308 41957210 ~ 41982582 (-) True XLOC_001411
TCONS_00002310 mRNA downstream 1313106 41770842 ~ 41817784 (-) False XLOC_001409
TCONS_00002320 mRNA upstream 497027 43652480 ~ 43684584 (-) False XLOC_001418
TCONS_00002322 mRNA upstream 539580 43695033 ~ 43712120 (-) False XLOC_001419
TCONS_00002323 mRNA upstream 556306 43711759 ~ 43727613 (-) False XLOC_001419
TCONS_00002324 mRNA upstream 558696 43714149 ~ 43727555 (-) False XLOC_001419
TCONS_00002325 mRNA upstream 558766 43714219 ~ 43727576 (-) False XLOC_001419
TCONS_00002319 other downstream 156015 42974760 ~ 42974875 (-) True XLOC_001415
TCONS_00002314 other downstream 853240 42277523 ~ 42277650 (-) True XLOC_001412
TCONS_00002309 other downstream 1529738 41601035 ~ 41601152 (-) True XLOC_001407
TCONS_00002308 other downstream 1818998 41311777 ~ 41311892 (-) True XLOC_001402
TCONS_00002306 other downstream 1870612 41230815 ~ 41260278 (-) True XLOC_001400
TCONS_00002327 other upstream 564496 43719949 ~ 43725218 (-) False XLOC_001419
TCONS_00002392 other upstream 2160756 45316209 ~ 45317628 (-) True XLOC_001459
TCONS_00002410 other upstream 2499622 45655075 ~ 45662751 (-) True XLOC_001465
TCONS_00002426 other upstream 3472036 46627489 ~ 46630704 (-) True XLOC_001475
TCONS_00002434 other upstream 3566926 46722379 ~ 46722518 (-) False XLOC_001480

Expression Profile

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