RNA id: XM_036975197.1


Basic Information

Item Value
RNA id XM_036975197.1
length 3704
RNA type mRNA
GC content 0.51
exon number 27
gene id LOC110504742
representative False

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 74165518 ~ 74438687 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATGACTGTATATGAAGGGAGCGACAGAGAGGGGAAAATTGGAGCAACgacaaagtgaaagagagagcgagcgagagagagggagacagagagagacacgctaGTGATCCCCTGTCCGAATCCCATTTCCAATATATAGTTTTACCTACCTGATCGAGTCGCGTGTGTACGGACACCATGCGCGCTTTTCAAGGGCGATACAACTATATAACATTTTCACCTCTTTTGGTATGTGAAGAATGTACAGTATTCGGATGTTCTTTAGAATAACAGTATTTACAGTAAATAGCTTATTTTGTTTTTCAACTCAACAAGCTACACAGAGTAGTCAGCTGTAGTTTTTGCAGCGGGTTGTAGGCTAAGTGCGTTCTGGACTGTTGAATACCGTGGATCAGCGGGCGGGCACGCAACTCGGGTTGTTTATAACGTTTGACATTCCCACCGTAGGAAGGAAAGTAGCCTAGGTAGGAAACGGGGAAACCCGGGCAAGGCGGGGCCGAACCGGAGACAGCCAAAGGGATTATTGAAGAACTCACGTTGCCTTGAAGCTTCGCCCTGTAGCCGATCCACACGCAGAGTCGCATCGTTTTGGGGTAACAATAATTTTCCACCCATTGGAATTTGGGGAATCTTTATTCCCAACTACTTGGTGATTAGTCTACGCTTCAAGTAGCCTAGGCTACGGCGAACATAACTAGTTTGTATTTACACCTATTTAACGTCGGTTGTGGTTATTTGCTGTGGAATATACGTTCCAGGACGGATTTGGGGGGAATTATTTCCCCAGACCCGTTGGACCATGGCGGACGACGATGTGCTGTTTGAAGATGTCTACGAGCTGTGTGAGGTCATTGGAAAGGGTCCATTCAGTGTGGTACGAAGATGTATCAACAGAGACGCAGGACAGCAGTTTGCTGTGAAGATCGTAGACGTGGCCCAGTTTACCTCCAGCCCTGGTCTCAGCACAGAGGATCTGAAGAGAGAGGCCAGTATCTGCCACATGCTGAAGCACCCTCACATCGTAGAGCTAGTGGAGACATACAGCTCAGATGGCATGCTCTACATGGTCTTCGAGTTtatGGATGGTGCAGACTTGTGTTTTGAGATTGTGAAGAGGGCAGACGCTGGCTTTGTCTACAGTGAGGCGGTGGCCAGTCACTACATGAGACAGATCTTGGAGGCACTGCGATATTGTCATGACAACAACGTCATCCATCGAGACGTGAAGCCCCATTGTGTCCTCCTGGCGTCTAAAGAGAACAGTGCTCCAGTGAAGCTGGGAGGGTTTGGCGTGGCCATCCAACTGGGAGAGTCAGGACTGGTGGCTGGAGgtCGTGTAGGCACGCCCCATTTCATGGCCCCAGAGGTGGTGAAGAGGGAACCGTATGGGAAGCCTGTAGATGTGTGGGGCTGTGGAGTCATCCTGTTCATCCTGCTATCTGGCTGCCTGCCATTCTACGGTACTAAGGAACGCCTGTTCGAAGCCATCTGCAGGGGAAAATACAAGctgAACCCCAGGCATTGGGGACATATCTCTGAGAGTGCTAAGGACCTGGTGAGACGGATGCTCATGCTAGATCCTGCAGAGAGAATCACTGTCTACGAGGCACTCAACCACCCCTGgctcaagGAGAGAGACCGTTATGCCTATAAGATCCACCTGCTAGAGACGGTGGAACAGCTGAGGAAGTTCAACGCCAGGAGAAAGCTCAAGgGAGCCGTACTGGCAGCAGTCTCCAGTCACAAGTTTAACTCCTTTTATGGAGACCCACCAGAGGAGAtgcctgacttccctgaagaCCCCACATCCTCAGGACTACTAGTAGCAGAACggGCTGTGTCTCAGGTGCTGGACAGCCTGGAGGAGATCCATGCGTTGACAGACTGCAGTGAGAAAGATATAGACTTCCTACACAGTGTCTTTCAAGACGagcatctacacacactactagACCTTTACGACAAAATCAACACAAAGTCATCTCCCCAGATCAGAAACCCCCCCAGCAATACTGTACAGAGGGCCAAGGAGGTACTGGAAGAGATCTCTTGTTACCCAGACAACCACGACGCCAAGGAGCTAAGACGGATACTGACCCAGCCGCACTTTATGGCCTTGCTCCAGACCCATGACGTGGTGGCCCATGAGGTGTACAGTGATGAGGCTTTGAGGGTGACCCCCCCGCCCACCTCACCCTACCTGAACGGAGACTCTCCCGAGAACACCAACGGAGACATGGACCTGGAGAACGTGACGAGAGTACGCCTGGTTCAGTTCCAGAAGAACACTGATGAACCTATGggcatcaCGCTGAAGATGAACAATCTGAACCACTGTATCGTAGCCAGGATAATGCACGGAGGAATGATCCACAGACAAGgAACGCTGCATGTAGGAGATGAGATCAGAGAGATCAACAGCATCAGTGTAGCCAACCAGACAGTAGAGCAACTACAGAGGATGCTGAAAGAGATGCGAGGCAGCATCACCTTTAAGATAGTGCCAAGCTACCGGACACAAGGATCTTCCTGTGAGAGAGAGTCCCCCTCCAACTCCAGGCAATCCCCTGCCAATGGCACTGGCCACTCCAGTGTTAACAGTTTTATCTTGGATCTGCCGTCTACCGTCCAACCCAAGAGTCGACAGATCTACGTAAGGGCCCAGTTTGAGTATGACCCCTCCAGAGATGACCTCATACCCTGCAAGGAGGCTGGGATTCCCTTCCGGGTTGGTGACATCGTCCAGATCATCAGTAAAGATGACCACAACTGGTGGCAGGGGAAGCTGGAGAACACTAAGAACGCCACCGCAGGGCTCATACCCTCACCAGAACTTCAGGAGtgGCGTGTGGCGTGTATAGCCATGGAGAAGACCAAGCAGGAGCAGCAGGCCAGCTGTACCTGGTTTGGCAAGAAGAAGAAACAGTACAAAGACAAATACCTGGCCAAGCACAACGcagATCTTGTCACGTATGAAGAGGTAGTGAAACTGCCTGCGTTCAAGAGGAAAACACTAGTCTTGTTAGGGGCCCATGGAGTGGGCAGAAGACACATCAAGAACACACTAATCACAAAACACCCCGACAGATTTGCCTACCCAATCCcacatACAACCAGACTTCCTAAGAAGGACGAGGAAAACGGGAAGAACTACTACTTTGTGTCACATGACCAGATGATGCAGGACATCAGTAACAATGACTACCTGGAGTACGGTAGTCACGAGGACGCCATGTACGGCACGCGGCTAGAGACCCTCCGCCAGATCCACGAGCAGGGACTCATCTCCATACTGGACGTAGagccacagGCCCTGAAGGTCCTGCGGACAGCGGAGTTCGCTCCTTACGTTGTTTTCATTGCTGCACCAACCATTACCCCTGGCATCAATGAGgacgAATCATTGCAGCATCTTCAGAAGGAGTCAGAAATTCTCCAGAAGACCTATGCCCATTACTTTGACCAGACCATAATCAACAACGAGAtagatgagaccatcagacaccTAGAGGAGGCTATAGACCTGGTCTGTACCAACGCACAGTGGATCCCTGTGTCCTGGGTCTACTGAGGAAAAAACAcaaagccctcctctcctctcctcctctcctctcctctcctctcctctcctcttctttctcctcctctcctctcctctcctcctctcctctcctctgctttctccccctctcctctcgtcctctc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU336133 lncRNA downstream 52218 74110956 ~ 74113300 (-) True G296267
TU336073 lncRNA downstream 155842 74009319 ~ 74009676 (-) True G296213
TU336066 lncRNA downstream 182140 73983102 ~ 73983378 (-) True G296206
TU336060 lncRNA downstream 187570 73977611 ~ 73977948 (-) True G296203
TU336001 lncRNA downstream 200646 73963300 ~ 73964872 (-) False LOC110520576
TU336343 lncRNA upstream 18655 74457340 ~ 74457778 (-) True G296457
TU336357 lncRNA upstream 42749 74481434 ~ 74481679 (-) True G296469
TU336367 lncRNA upstream 53873 74492558 ~ 74492865 (-) True G296479
TU336368 lncRNA upstream 59002 74497687 ~ 74498261 (-) True G296480
TU336369 lncRNA upstream 59137 74497822 ~ 74500534 (-) True G296481
XM_021597965.2 mRNA downstream 58278 74104520 ~ 74107240 (-) True LOC100136284
XM_021597964.2 mRNA downstream 136696 73985901 ~ 74028822 (-) True LOC110520577
XR_005051412.1 mRNA downstream 187967 73977380 ~ 73977551 (-) True LOC118964361
LOC118964353 mRNA downstream 191079 73974330 ~ 73974439 (-) True LOC118964353
XR_005051411.1 mRNA downstream 191903 73973452 ~ 73973615 (-) True LOC118964355
XM_021597975.2 mRNA upstream 35273 74473958 ~ 74475223 (-) True LOC110520583
NM_001124688.1 mRNA upstream 57504 74496189 ~ 74562871 (-) True LOC100136729
XM_021597977.2 mRNA upstream 147974 74586659 ~ 74600282 (-) False LOC110520585
XM_021597976.2 mRNA upstream 147974 74586659 ~ 74645214 (-) True LOC110520585
XM_021597979.2 mRNA upstream 238966 74677651 ~ 74680783 (-) False LOC110520587
TU336000 other downstream 193688 73970482 ~ 73971830 (-) True LOC110520576
TU336013 other downstream 285147 73877719 ~ 73880371 (-) True G296166
TU336010 other downstream 291701 73872973 ~ 73873817 (-) True LOC110520572
TU335922 other downstream 355922 73808482 ~ 73809596 (-) True G296100
TU335928 other downstream 390219 73773154 ~ 73775299 (-) True G296102
TU338161 other upstream 1521862 75960547 ~ 75963074 (-) True G298065
TU338234 other upstream 1616436 76055121 ~ 76057006 (-) True G298131
TU338309 other upstream 1727318 76166003 ~ 76166401 (-) True G298192
TU339219 other upstream 2344158 76782843 ~ 76787731 (-) True G299024
TU340463 other upstream 3397797 77836482 ~ 77839215 (-) True pknox1.1

Expression Profile