RNA id: TCONS_00002323


Basic Information

Item Value
RNA id TCONS_00002323
length 4007
RNA type mRNA
GC content 0.35
exon number 9
gene id XLOC_001419
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 43695033 ~ 43727613 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTtacttgacttttattttgacaggaaACCAAAACCTGGACGACACGGACGTTTGTTCATCACGTGTGTTGTTTTCACTAGTTGTCACTTGTCAGTAAGTTCTTCTactgtttattgtgttttttctTCTTGTAAACCGATGCTGCTTGTACGAAACTTTCAAATTGACTTGTTGTTAACTATTTGCAGCGCATAATCGTGCATcatatgtttattatgtttttacattgtgtTTACAGTGATTTACACTGCAGCACAGAGTTACCTTTACACTCGTCACGTGACGCGTGataatgaaacataaataaattacgcCAAGTATTGCATGATTAATCATTATTAGCCTAAATTAACGCTGCAAAAATGTTTATCAAACACAGTTACATGTCAACTTATCAAATAACGTATCTGTTAACAACAAACGACAGTGTGTGGTTATTTTGAGGTAAAGTCATATCTAAATATGTAAAATTTCAAACAATTCAGTACGACCTTTAAAAGGTAAATGTGTATTTAGTATAAACTTTAGAGTATTTAATCAAATTTTgctaacaaatattaatttttatgcCTTTTCTACATGTGTAGGTTGTTATTGAAGACTATGGGTCGTCTGGACGGGAAAGTGATAGTTCTTTCAGCAGCAGCACAAGGCATTGGAAAAGCATCTGCTataGCTTTTGCCAAAGAAGGTGCTCAAGTCACTGCTACGGATATCAATGGAGAGAAACTGAAAGAGCTGGATGGCATTCCAGGAATCAAAACCAAAGTTGTTGATGTTACCAAGAAAGACCAAGTCGATGCTCTTGCCAAGGACTTTGACCATGTGGATGTGCTCTTCAATATTGCTGGATTTGTTCATCATGGCTCAATACTGGACTGTGAGGAATCAGATTGGGACTTCACCATGAATGTGAATGTCCGGAGCATGTACCTGATGATCAAGGCCTTCCTGCCTAAGATGCTGGCTCGTAAATCTGGGAATATCATCAATATGGCATCTGTGGCATCTAGTATCAAAGGAGTGGTGAACAGATGTGTCTACAGCACGTCTAAAGCTGCCGTCATTGGACTAACTAAATCTGTGGCAGCTGATTTCCTGGAACAAGGCATCCGCTGTAATTGCATCTGCCCAGGAACTGTGGATACGCCATCATTACGCGAGAGGATTCAGGCCAGGCCTGATCCAGAGCAGGCTTTTAAAGACTTTATGGCCAGACAGAGGACCGGTCGATTGTGCACTGCAGAGGAAGTGGCGCATCTGTGTGTGTACTTGGCTTCAGATGAGTCTACCTTTGTAACGGGAACAGAGGTCATCATTGATGGAGGATGGAGACTATGAAGATCATTTGTTGCATACTGTAGTCTTAAACAGAGCAAACTGTAgtgaataattttctttattaatggccaaacaaaaaacaaagaactgCATTTTCTGAAAATCATTGTCTTGGTTGTGTTTAATATGTATCAAATCAATCTTGGGCAGCAATATCACTTTTTTGCACTGTATTTCATGTTTCTAATTGTATAAAATGGCAATTGCAGAATGTGTTATCTGGTActctaaaatagtttaaaaaataataataaacaagccAATTGTAATGAAAATGATTTAGTATGTTGCTATTTTAGTTCTGACGAATTCCTTATTATCAATAAGATTAATAAaccatgtttttaataataattaaaattatggaACTAAAACAATCTTGAACTTTTAGTGTTCATTTTATTAATCATCCGGCTTTAGCTTGATTTTATTGACAAATTAACCACATAAAGCCTAAACATAGTATGCAATTTTAGTGTTAAATATGATTAGAAGATCATATTAAACACATAAATCATGAATTAATAAGATTAATAAACTGTTTTAACTGAAATCCAGAATAAAAACAGTTCTGAACTCTGACTTAATCTCGATTATATGTGACATttgattaaattacataaaaccacagtaaaactgtattttttattattaacatcagATACATGACAATATAGTAAACAAAATAATGCCAGGGTGATAGAAAGTAAATAACAAcagcacaataaataaatataaaaacaagtatAAATAGTTAACTAAAATTCTTACAATTACAAAACAAGCAGGACCTTTACATTAATCAAAAGTTTTGAAGCTAGAGCACAACTGGACAGTTTTAATGGCCTTTCTATTAGCACTATGCTGAATAGTGCATGTTTAATCTTTCAGTTCCTTATAGAACAcagtaaaacaatgtttttttgttggaaaatttaCACTTATGAATGTGAAacttaattaacaaaataaataggttaataaCAAATACTTCGTTATTCAaattatcataattaaaatatcctaaaattacgtttttcaaaattaaaattaaagagtacatttttttttttataaaaacagaaGCATCATACCAAATCTTTTTAACATAAACACAGCGCCAAAAGATGTGGGGTACATTTTCCAAATATAAAGAACAAAAAGAGCAATATGTATATCAATATCCCTTTTAAATTTACTGAGGAAATGTTAAACAGTGTATAATATGATTAGAAGATAATGATAAACATGCGTCTCGTATTGAAGACCTGTGATTGGTCGGCAACTTTTACGTCTAGCCACTCACGCAACAAATGAGGCGGGACTGGTCGGAAAAGAGGTTGAAAGCATAAATATGATTGGACGTAGGTTCAAACAACACCCCCCTCTGCCATTCATGCTTCCGGATGTCTGGACCGGGTAAAAGATTAACcttttaaatatactgtatagtCGCATTTCTGGACGAGGCGCGTGTATTTTCAGTATTATTTGCTTGTATAGGCACAAAGCTCGGCACATGCCAGTCAATAAATCACTCGGGAAATGCTCAAGATTGCTGATGCTTTCGTTTGAGGTTTGATTTGATGGCATGGAGGTTTAAAGTCatgattgtttattattaaatgtcaGACATTTGATTTATCACacaaacaaaagagagaaatTAATGTTTTAGGTCATACACAACACTATATTCGTGATGAATAAGAAACAAGAGGACATAAATATGCCTGATTATATGTAGATAAACATGAATCTGATGTTTAGGAACAGTTAATGACATGTTCAGTCAGTTCTTGGTTTACTACAGTACCATAAACAGAGACCATATGCCACGAGCTCTTCAGTCTGATAAAACACCATATGGCCCAGGCGTCGCGTTTAGTCCTGTCACAAGCCGATTAACCTGTTGAATAAACCAGTCGCTTTTCTGTCCTAGTACTCGAGTTATTTCCCTTTTGAGCTCCATTGACAGGCTTTAACGGTAGACAGACATAGTGACCGTTATTTAGCTGAacaactgaggtaaagttggttttatattcccacattcgttcagtgacaactcgTTCCCACACGCTACTTTGAGTATTcagtctgaaatcgcatgtaagtATGCCTTacaaacaacattagcactatttaatggACTGCGAACTATGTTGTGCTTTGATTGTGAGTAGTTAGCGAATCTGATttcaatattttcaatatttagtaGAGAATAGGCTACTTCTCtgcaattatattattaatgagttAGTCAGAATGTGCAAATATTACCAACTTTATCCAAATATATGAACACAGGTCATGGGCACGAGCTCGTGCTATGGCTAGAGGACTCGGGTGAGGATGGAGCAGAAGTGCAGTGCCATGGAGGATGtccagtccagaccacattcagcCCACTCCCTTTACTCGCAGCGGACTGAGGATGCCACCTCTGCGTTGGGGAATCATGCTGAAGTAGGTTCATATATTAGTCAGACTTCCACACTTgatactgatttctttttgtcagAAATTAGTTTGGAAGTAGcatatagttgttgtttttttaatgatatgTAGGCTACAGAGTGCTGTGGTTAATTGTATGTGTGTTCTTCTAAGTCGAcctttaaaggatagttcacctaaaaatgacaatATACTCACA

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000181792

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00002321 lncRNA downstream 27176 43672669 ~ 43684583 (-) True XLOC_001418
TCONS_00003463 lncRNA downstream 94590 43518209 ~ 43617169 (-) False XLOC_001417
TCONS_00002972 lncRNA downstream 96621 43518355 ~ 43615138 (-) True XLOC_001417
TCONS_00003462 lncRNA downstream 171672 43518209 ~ 43540087 (-) False XLOC_001417
TCONS_00002971 lncRNA downstream 556306 43130890 ~ 43155453 (-) True XLOC_001416
TCONS_00002337 lncRNA upstream 174800 43902413 ~ 43904199 (-) False XLOC_001422
TCONS_00002336 lncRNA upstream 174800 43902413 ~ 43904279 (-) True XLOC_001422
TCONS_00002344 lncRNA upstream 224685 43952298 ~ 43953627 (-) True XLOC_001427
TCONS_00002360 lncRNA upstream 807012 44534625 ~ 44536218 (-) True XLOC_001440
TCONS_00002366 lncRNA upstream 979788 44707401 ~ 44710865 (-) True XLOC_001444
TCONS_00002320 mRNA downstream 27175 43652480 ~ 43684584 (-) False XLOC_001418
TCONS_00002317 mRNA downstream 932684 42776553 ~ 42779075 (-) False XLOC_001414
TCONS_00002318 mRNA downstream 933249 42776942 ~ 42778510 (-) True XLOC_001414
TCONS_00002315 mRNA downstream 1422055 42281308 ~ 42289704 (-) False XLOC_001413
TCONS_00002313 mRNA downstream 1729177 41957210 ~ 41982582 (-) True XLOC_001411
TCONS_00002330 mRNA upstream 74344 43801957 ~ 43862638 (-) False XLOC_001420
TCONS_00002331 mRNA upstream 79035 43806648 ~ 43892349 (-) True XLOC_001420
TCONS_00002332 mRNA upstream 166625 43894238 ~ 43899422 (-) False XLOC_001421
TCONS_00002333 mRNA upstream 166912 43894525 ~ 43897831 (-) True XLOC_001421
TCONS_00002334 mRNA upstream 174353 43901966 ~ 43905263 (-) False XLOC_001422
TCONS_00002319 other downstream 736884 42974760 ~ 42974875 (-) True XLOC_001415
TCONS_00002314 other downstream 1434109 42277523 ~ 42277650 (-) True XLOC_001412
TCONS_00002309 other downstream 2110607 41601035 ~ 41601152 (-) True XLOC_001407
TCONS_00002308 other downstream 2399867 41311777 ~ 41311892 (-) True XLOC_001402
TCONS_00002306 other downstream 2451481 41230815 ~ 41260278 (-) True XLOC_001400
TCONS_00002392 other upstream 1588596 45316209 ~ 45317628 (-) True XLOC_001459
TCONS_00002410 other upstream 1927462 45655075 ~ 45662751 (-) True XLOC_001465
TCONS_00002426 other upstream 2899876 46627489 ~ 46630704 (-) True XLOC_001475
TCONS_00002434 other upstream 2994766 46722379 ~ 46722518 (-) False XLOC_001480
TCONS_00002435 other upstream 2995009 46722622 ~ 46722705 (-) False XLOC_001480

Expression Profile

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