RNA id: TU268801


Basic Information

Item Value
RNA id TU268801
length 222
lncRNA type intronic
GC content 0.57
exon number 1
gene id G235165
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 21805530 ~ 21805751 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aaaaaagggttatacctggaaccaaaaaaggattttaacctggaaccaaaaaagggttatacctggaaccaaaaaaggattttaacctggaaccaaaaaagggttatacctggaaccaaaaaaggatTTTAACCAGGAACCAAATGTGGGTTTCATCttgaaccaaaaaagggttctcttatgtggacagccaaagaacccttttttctaagagtgtatgaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU268779 lncRNA downstream 16150 21788047 ~ 21789380 (-) True G235145
TU268681 lncRNA downstream 172741 21632282 ~ 21632789 (-) True G235052
TU268651 lncRNA downstream 214704 21588714 ~ 21590826 (-) True LOC110513449
TU268652 lncRNA downstream 215896 21587450 ~ 21589634 (-) False LOC110513449
TU268653 lncRNA downstream 216958 21587450 ~ 21588572 (-) False LOC110513449
TU268793 lncRNA upstream 77488 21883239 ~ 21919236 (-) True G235157
TU268790 lncRNA upstream 79035 21884786 ~ 21891946 (-) True pmvk
TU268842 lncRNA upstream 82340 21888091 ~ 21889440 (-) True G235200
TU268871 lncRNA upstream 137353 21943104 ~ 21943891 (-) True G235229
TU268877 lncRNA upstream 146026 21951777 ~ 21952115 (-) True G235235
XM_021593341.2 mRNA downstream 44711 21756657 ~ 21760819 (-) False LOC110513558
XM_021593354.2 mRNA downstream 44711 21756657 ~ 21760819 (-) False LOC110513558
XM_036971925.1 mRNA downstream 44711 21756657 ~ 21760819 (-) True LOC110513558
XM_021593347.2 mRNA downstream 44881 21756657 ~ 21760649 (-) False LOC110513558
XM_036971926.1 mRNA downstream 49820 21744425 ~ 21755710 (-) False LOC118946878
XM_021593461.2 mRNA upstream 79030 21884781 ~ 21887272 (-) False pmvk
XM_021593474.2 mRNA upstream 96722 21902473 ~ 21926314 (-) True LOC110513756
LOC110503903 mRNA upstream 131431 21937182 ~ 21949846 (-) True LOC110503903
XM_036964179.1 mRNA upstream 233727 22039478 ~ 22040884 (-) True LOC118944504
XM_036972047.1 mRNA upstream 237638 22043389 ~ 22050828 (-) False LOC110513791
TU268720 other downstream 50029 21744451 ~ 21755501 (-) True LOC118946878
TU268723 other downstream 62119 21738845 ~ 21743411 (-) True G235092
TU268194 other downstream 306698 21498408 ~ 21498832 (-) True G234621
TU268159 other downstream 335585 21469661 ~ 21469945 (-) True G234600
TU268086 other downstream 349814 21445488 ~ 21455716 (-) True LOC110513321
TU269608 other upstream 768082 22573833 ~ 22574989 (-) True G235881
TU270901 other upstream 1351358 23157109 ~ 23189031 (-) True G237047
TU271267 other upstream 1965773 23771524 ~ 23780135 (-) True LOC110514600
TU271572 other upstream 2374805 24180556 ~ 24183554 (-) False G237657
TU271573 other upstream 2374805 24180556 ~ 24183964 (-) True G237657

Expression Profile