RNA id: TU271789


Basic Information

Item Value
RNA id TU271789
length 900
lncRNA type inter_gene
GC content 0.38
exon number 1
gene id G237849
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 24529818 ~ 24530717 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccAACACTATAaacaacatgaaaacagcctaaccagctattctagggcgagtaaaatggtcagagtgaggtttTCTCCTATTTGTGtcttgaagtagctagcaagctagtcaactttagccagttagtttGGGTGCATGACTTGtgagatcaaccctactcctcagccagagcgtccaaatgctccgagagcgaaacgctctgaatatACAAACAGAGAATCTGACAACGCTCTAAATTATACGAATGTCCAGAGTGCACAAATCACGAACACACCCTAAATAATTACATTTCTGGGGAATTGTCTTTGCTCTGTGACCCTCTTTCTTTTCACTTATATtgtattattttcatattttgaAGCCATTTACACCAAAGTAGCGTAAGATATCAAAAATCACTCTAAAAGACATTATGGGGATGTTTTCTAGATGTTTTGGGGATTTTATATATCTTAATTTGCCATAGCAGTTTTGATTTTGATCAGTATCCTCTCATAACTGACCAACAATGTCTCCTCTTACGCTGTGGTTCATGTTCCGTGTCCCCTTAACTGTGTCTTTGCCTAAGAAACGGTTCACAAAGTTACGTTCTCTACTTAATTTGTTCTTGTTCTCTAAAGCACTGCAGTTTGATTTGATCTCTTCTGTGCTATTAACCCCACTACTCAGATTTCCAGTGTTACTGATGCCATTTCTATGCTCACCGATCCATATCTGTGATTCATAACCCTATATTCAATGGAATGCCTATTCTTTGGTACCAGTCCCTGTCTCTCATATTGTTACAACCGAGATGTATGGCTGTTAAATAGTTATAATTCTGCTTTATTAAAATTAATTAGATGGGAATATATTTACCTCTAGGGCTTTCTGAAAATATACACTCATCTAAATGTCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU271780 lncRNA downstream 1037 24528474 ~ 24528781 (-) True G237840
TU271778 lncRNA downstream 2255 24527300 ~ 24527563 (-) True G237838
TU271777 lncRNA downstream 2830 24526784 ~ 24526988 (-) True G237837
TU271766 lncRNA downstream 14385 24515195 ~ 24515433 (-) True G237829
TU271765 lncRNA downstream 15497 24514111 ~ 24514321 (-) True G237828
TU271790 lncRNA upstream 998 24531715 ~ 24532048 (-) True G237850
TU271791 lncRNA upstream 3841 24534558 ~ 24534861 (-) True G237851
TU271803 lncRNA upstream 21398 24552115 ~ 24552374 (-) True G237862
TU271804 lncRNA upstream 21976 24552693 ~ 24552980 (-) True G237863
TU271818 lncRNA upstream 29615 24560332 ~ 24560576 (-) True G237877
XM_036972935.1 mRNA downstream 30833 24400704 ~ 24498985 (-) True LOC110515020
XM_036964700.1 mRNA downstream 45398 24483236 ~ 24484420 (-) True LOC118944659
XM_021594088.2 mRNA downstream 120121 24400704 ~ 24409697 (-) False LOC110515020
LOC110515008 mRNA downstream 138703 24389041 ~ 24391115 (-) True LOC110515008
XM_036972913.1 mRNA downstream 151453 24361483 ~ 24378365 (-) True LOC110514995
XM_036972942.1 mRNA upstream 34996 24565713 ~ 24576356 (-) False LOC110515051
XM_021594113.2 mRNA upstream 34996 24565713 ~ 24576372 (-) False LOC110515051
XM_036972936.1 mRNA upstream 34996 24565713 ~ 24576410 (-) True LOC110515051
XM_021594134.2 mRNA upstream 71904 24602621 ~ 24619117 (-) True LOC110515085
LOC110505156 mRNA upstream 115642 24646359 ~ 24647543 (-) True LOC110505156
TU271769 other downstream 8274 24521219 ~ 24521544 (-) True G237832
TU271573 other downstream 345854 24180556 ~ 24183964 (-) True G237657
TU271572 other downstream 346264 24180556 ~ 24183554 (-) False G237657
TU271267 other downstream 749683 23771524 ~ 23780135 (-) True LOC110514600
TU270901 other downstream 1340787 23157109 ~ 23189031 (-) True G237047
TU272242 other upstream 238845 24769562 ~ 24769971 (-) False LOC110515154
TU272241 other upstream 238987 24769704 ~ 24770323 (-) True LOC110515154
TU272446 other upstream 405799 24936516 ~ 24966208 (-) False LOC110515208
TU272443 other upstream 405950 24936667 ~ 24952182 (-) False LOC110515208
TU272445 other upstream 406912 24937629 ~ 24947005 (-) True LOC110515208

Expression Profile