RNA id: TU323959



Basic Information


Item Value
RNA id TU323959
length 371
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G285713
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64276604 ~ 64276974 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


gatactgttgtgaagaagtttaaagccggatttggataccaaaagatttcccaagctttaaacatcccaaggagcactgtgcaagcgataatattgaaatggaaggagtatcagaccactgcaaatctaccaagacctggccgtccctctaaactttcagctcatacaaggagaagactgatcagagatgcagccaagaggcccatgatcactctggatgaactgcagagatatacagctgaggtgggagactctgtccataggacaacaatcagtcgtatattgcacaaatctggcctttatggaagagtggcaagaagaaagccatttcttaaagatatccataaaaagtgttgtttaaagtttgccac

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU323942 lncRNA downstream 10603 64265798 ~ 64266001 (-) True G285696
TU323938 lncRNA downstream 11695 64264653 ~ 64264909 (-) True G285692
TU323929 lncRNA downstream 15362 64261015 ~ 64261242 (-) True G285683
TU323924 lncRNA downstream 21728 64254633 ~ 64254876 (-) True G285678
TU323875 lncRNA downstream 62265 64214030 ~ 64214339 (-) True G285629
TU323965 lncRNA upstream 2343 64279317 ~ 64279557 (-) True G285719
TU323966 lncRNA upstream 2669 64279643 ~ 64279931 (-) True G285720
TU323979 lncRNA upstream 12249 64289223 ~ 64289465 (-) True G285733
TU323986 lncRNA upstream 15377 64292351 ~ 64292728 (-) True G285740
TU324004 lncRNA upstream 26558 64303532 ~ 64303757 (-) True G285758
XM_036974914.1 mRNA downstream 102328 63911999 ~ 64174276 (-) True LOC110520380
XM_036964596.1 mRNA downstream 372386 63901468 ~ 63904218 (-) False LOC110505395
XM_036964597.1 mRNA downstream 372386 63901468 ~ 63904218 (-) True LOC110505395
XM_036964580.1 mRNA downstream 372390 63901468 ~ 63904214 (-) False LOC110505395
XM_036964595.1 mRNA downstream 372391 63901468 ~ 63904213 (-) False LOC110505395
XM_036974916.1 mRNA upstream 208815 64485789 ~ 64641565 (-) False LOC110520379
XM_036974917.1 mRNA upstream 208815 64485789 ~ 64641565 (-) False LOC110520379
XM_021597673.2 mRNA upstream 575529 64852503 ~ 64855851 (-) True LOC110520388
XM_021597667.2 mRNA upstream 585052 64862026 ~ 64883035 (-) False LOC110520386
XM_021597666.2 mRNA upstream 585052 64862026 ~ 64890987 (-) False LOC110520386
TU322065 other downstream 1561427 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 6687421 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 6873029 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 6978842 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 8865117 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 692575 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 737285 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 777726 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 777726 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 958206 65235180 ~ 65235908 (-) True G286953

Expression Profile