RNA id: TU323979


Basic Information

Item Value
RNA id TU323979
length 243
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G285733
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 64289223 ~ 64289465 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

atattgtcacaccctgatcagtttcacctgtccttgtgattgtctccacccccctccaggtgttgcttattttacccagtgtatttatccctgtgtttcctgtctctctgtgccagtgtatttagccatgtgtttcctgtctctctgtgccagttcatcttgtatgtttccaagtcaaccagtggttttcccgttctcctgctttttgcattctcctttttctagtcctcccagttttgcctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU323966 lncRNA downstream 9292 64279643 ~ 64279931 (-) True G285720
TU323965 lncRNA downstream 9666 64279317 ~ 64279557 (-) True G285719
TU323959 lncRNA downstream 12249 64276604 ~ 64276974 (-) True G285713
TU323942 lncRNA downstream 23222 64265798 ~ 64266001 (-) True G285696
TU323938 lncRNA downstream 24314 64264653 ~ 64264909 (-) True G285692
TU323986 lncRNA upstream 2886 64292351 ~ 64292728 (-) True G285740
TU324004 lncRNA upstream 14067 64303532 ~ 64303757 (-) True G285758
TU324029 lncRNA upstream 29450 64318915 ~ 64319128 (-) True G285782
TU324036 lncRNA upstream 37187 64326652 ~ 64326972 (-) True G285789
TU324051 lncRNA upstream 46673 64336138 ~ 64336339 (-) True G285804
XM_036974914.1 mRNA downstream 114947 63911999 ~ 64174276 (-) True LOC110520380
XM_036964596.1 mRNA downstream 385005 63901468 ~ 63904218 (-) False LOC110505395
XM_036964597.1 mRNA downstream 385005 63901468 ~ 63904218 (-) True LOC110505395
XM_036964580.1 mRNA downstream 385009 63901468 ~ 63904214 (-) False LOC110505395
XM_036964595.1 mRNA downstream 385010 63901468 ~ 63904213 (-) False LOC110505395
XM_036974916.1 mRNA upstream 196324 64485789 ~ 64641565 (-) False LOC110520379
XM_036974917.1 mRNA upstream 196324 64485789 ~ 64641565 (-) False LOC110520379
XM_021597673.2 mRNA upstream 563038 64852503 ~ 64855851 (-) True LOC110520388
XM_021597667.2 mRNA upstream 572561 64862026 ~ 64883035 (-) False LOC110520386
XM_021597666.2 mRNA upstream 572561 64862026 ~ 64890987 (-) False LOC110520386
TU322065 other downstream 1574046 62714575 ~ 62715177 (-) True G284018
TU315276 other downstream 6700040 57584386 ~ 57589183 (-) True G277749
TU315188 other downstream 6885648 57402984 ~ 57403575 (-) True G277673
TU315090 other downstream 6991461 57270782 ~ 57297762 (-) True si:dkey-91i10.3
TU312500 other downstream 8877736 55410143 ~ 55411487 (-) True G275250
TU324819 other upstream 680084 64969549 ~ 64970755 (-) True G286522
TU324898 other upstream 724794 65014259 ~ 65029736 (-) True G286580
TU324968 other upstream 765235 65054700 ~ 65055211 (-) False G286638
TU324969 other upstream 765235 65054700 ~ 65075985 (-) True G286638
TU325334 other upstream 945715 65235180 ~ 65235908 (-) True G286953

Expression Profile