RNA id: TU325340



Basic Information


Item Value
RNA id TU325340
length 268
lncRNA type inter_gene
GC content 0.66
exon number 1
gene id G286959
representative True

Chromosome Information


Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 65250231 ~ 65250498 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence


agccgccagagccgcaagtctgtcctgagccgtcagagccgcaagtctgtcctgagccgtcagtctgtcctgagccgtgagagccgccagtctgtcctgagccgtcagaaccgccagtctgtcctgagccgtcagtcagccaggagctgccagagccgtcagtcagccaggacctgccagagccgtcagtcagccaggacctgccagagccgtcagccagccaggagctgccagagacgtcagccagccaggagctgtcAGAGCCGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU325335 lncRNA downstream 5247 65244716 ~ 65244984 (-) True G286954
TU325303 lncRNA downstream 9246 65239068 ~ 65240985 (-) True G286927
TU325333 lncRNA downstream 17571 65232046 ~ 65232660 (-) True G286952
TU325332 lncRNA downstream 18368 65231434 ~ 65231863 (-) True G286951
TU325305 lncRNA downstream 58725 65190969 ~ 65191506 (-) True G286929
TU325341 lncRNA upstream 1145 65251643 ~ 65251849 (-) True G286960
TU325342 lncRNA upstream 1491 65251989 ~ 65252788 (-) True G286961
TU325367 lncRNA upstream 40234 65290732 ~ 65304498 (-) True G286979
TU325375 lncRNA upstream 50196 65300694 ~ 65300924 (-) True G286986
TU325401 lncRNA upstream 87675 65338173 ~ 65339895 (-) True G287005
XM_036965070.1 mRNA downstream 67577 65173958 ~ 65182654 (-) False LOC110520397
XM_021597684.2 mRNA downstream 100060 65146520 ~ 65150171 (-) True c3h2orf76
XM_021597681.2 mRNA downstream 141432 65106729 ~ 65108799 (-) True c1ql2
XM_021597676.2 mRNA downstream 258078 64987753 ~ 64992153 (-) False en1a
XM_021597678.2 mRNA downstream 258080 64987753 ~ 64992151 (-) False en1a
XM_021597696.2 mRNA upstream 70396 65320894 ~ 65326014 (-) True LOC110520402
XM_021597699.2 mRNA upstream 75664 65326162 ~ 65329900 (-) False gjb8
XM_021597700.2 mRNA upstream 75664 65326162 ~ 65330529 (-) True gjb8
XM_036974947.1 mRNA upstream 80334 65330832 ~ 65357384 (-) False cryl1
XM_021597697.2 mRNA upstream 80334 65330832 ~ 65362594 (-) False cryl1
TU325334 other downstream 14323 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 174246 65054700 ~ 65075985 (-) True G286638
TU324968 other downstream 195020 65054700 ~ 65055211 (-) False G286638
TU324898 other downstream 220495 65014259 ~ 65029736 (-) True G286580
TU324819 other downstream 279476 64969549 ~ 64970755 (-) True G286522
TU325373 other upstream 47709 65298207 ~ 65300417 (-) True G286985
TU325443 other upstream 196327 65446825 ~ 65447283 (-) True G287042
TU325523 other upstream 329293 65579791 ~ 65580495 (-) True G287112
TU327202 other upstream 1592173 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 2376334 67626832 ~ 67633493 (-) True G289678

Expression Profile