RNA id: TU326437


Basic Information

Item Value
RNA id TU326437
length 1288
lncRNA type intronic
GC content 0.40
exon number 2
gene id G287929
representative True

Chromosome Information

Item Value
chromosome id NC_048567.1
NCBI id CM023221.2
chromosome length 85311031
location 66232707 ~ 66234021 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTTGAGTGGCTATTTATTTTTGTCCAGTGACCCCCAAAGCAAAGGTAGCCCGTTACATATCCCCAACCCAAGCAACACTTGATAAGTATTGGTAAAATTGGTTACAGATGGACAGCTGTGACTTGTAGATAGCAAAATAGTTGTGAAGAGATGTGCCATTGAATTGGTACATGGTTTGTGAACTGATACACAAGACAACGCTGGATTCAAAACCTTTCAGTTTAActgattatacaaaattcttgcaatcaataaaatgttatatatacacacacacatgtatatggGGTATAGAAcaatcccagctctgcagattttgctgcttttggtactgtccatatgtagcttgtttttggtcgcaggttcaaGAATGGCTGaataattgcaacatttacctggggctaactctgcaaatagcactgctaggtgatttaaaaagtcatagtcaatcgatcaataacaATTATACTCATAACAAAAATGTTTCTTTAATTTACAATATGTAGaatctatgagaatagaaaggttctgaaaaacaaacaaaagataactattgtaaactATACTGTGTCTgtgaaaatatatacagtacgtACATATAAGacggaactagaagcataagtcttgttgtccattagtttactccaatttggggaggggtggtagggttaggagaAAATATATAAGAaaattgtggaataatagtgaagatatcaaaactatgaaatcatgtagtaacccaaaaacaccatttgccttgatgactgccttagagtgtgcaaagctttctctcaaccagattcacctggaatgattttccaaaagtcttgaaggagttcccacatatgctgagcacttgttggctgcttttccttcactctgcagtccaacttgggttgaggtcgggtgattgtgaaggcgagatcatctgatgcagcaccatcactctccttcttggtcaaatagcccttacagagcctggaggtgtgttttgggtcattgtcctgttgaaaaacaaatgatagtgggactaagtgcaaaccagatgggatggcgtatcgctgcaatatgctgtggtagccatgctggttaactgtgccttgaattctaaataaatcacagacagtgtcaccagcaaagcacccccacacctactcctccatgcttcacggtgggaaccacacatgcagagatcttccgttcacctactctgcttctcacaaagacacgggtttggaaccaaaaataacttatcctctgcagcagaggtaactatgggtcttcctt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU326359 lncRNA downstream 124273 66107872 ~ 66108434 (-) True G287853
TU326199 lncRNA downstream 144150 66088305 ~ 66088557 (-) True G287706
TU326190 lncRNA downstream 157289 66075183 ~ 66075418 (-) True G287697
TU326186 lncRNA downstream 163347 66069137 ~ 66069360 (-) True G287693
TU326147 lncRNA downstream 232518 65997968 ~ 66000189 (-) True G287666
TU326459 lncRNA upstream 44359 66278380 ~ 66278703 (-) True G287951
TU326461 lncRNA upstream 46549 66280570 ~ 66280905 (-) True G287953
TU326462 lncRNA upstream 47592 66281613 ~ 66281866 (-) True G287954
TU326464 lncRNA upstream 49771 66283792 ~ 66284069 (-) True G287956
TU326470 lncRNA upstream 60204 66294225 ~ 66294475 (-) True G287962
LOC110520425 mRNA downstream 39220 66183116 ~ 66193487 (-) True LOC110520425
XM_021597738.2 mRNA downstream 162573 66036342 ~ 66070134 (-) True rnf17
XM_021597737.2 mRNA downstream 205106 66020033 ~ 66027601 (-) True ttf2
XM_021597736.2 mRNA downstream 205343 66020033 ~ 66027364 (-) False ttf2
XM_021597735.2 mRNA downstream 205370 66020033 ~ 66027337 (-) False ttf2
XM_021597740.2 mRNA upstream 34164 66268185 ~ 66295887 (-) True LOC110520429
XR_005051358.1 mRNA upstream 166046 66400067 ~ 66412373 (-) True LOC118964314
XM_036964598.1 mRNA upstream 238318 66472339 ~ 66475059 (-) True LOC118944607
XM_036974988.1 mRNA upstream 256447 66490468 ~ 66537895 (-) True LOC110520431
XM_036974989.1 mRNA upstream 498216 66732237 ~ 66746474 (-) False LOC110504514
TU325523 other downstream 652212 65579791 ~ 65580495 (-) True G287112
TU325443 other downstream 785424 65446825 ~ 65447283 (-) True G287042
TU325373 other downstream 932290 65298207 ~ 65300417 (-) True G286985
TU325334 other downstream 996799 65235180 ~ 65235908 (-) True G286953
TU324969 other downstream 1156722 65054700 ~ 65075985 (-) True G286638
TU327202 other upstream 608650 66842671 ~ 66842881 (-) True G288578
TU328494 other upstream 1392811 67626832 ~ 67633493 (-) True G289678
TU328453 other upstream 1649731 67883752 ~ 67886232 (-) True G289653
TU328904 other upstream 1972569 68206590 ~ 68208395 (-) True si:ch211-214p13.7
TU329440 other upstream 2345082 68579103 ~ 68580707 (-) True G290542

Expression Profile