RNA id: TU381040


Basic Information

Item Value
RNA id TU381040
length 3014
RNA type TUCP
GC content 0.45
exon number 4
gene id LOC110522355
representative True

Chromosome Information

Item Value
chromosome id NC_048568.1
NCBI id CM023222.3
chromosome length 46841314
location 27054628 ~ 27185449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGGCGACATGGGGTCAGGAGGACGCAACAGGGAGGAGAAGAAGCAGCAGAAAGACCTGGAGAAGAAGCAGAAAGACCTGGCAGCCATTTTGGAGGATAAGAAGCAAGGCGGCGCTGCCATAGgtgCGAGGATAGCCGAGTACTCCCAGCTGTATGACCAGGTGATGTTTAAAGACCCTCCAGGTCAGGGCTCCAGCAGCCCGGGTCCTCCTGGTTCGCACCATTCCCACCTAGGGCTGGCCTCCTCCCCATCCCTACCTGAGACCTGCTCCTCCCTGGGCCTTGGGCTGGAGGATGACTGGCTCCTCTCCACCTACAGCAACGGGGAGCTGGCCAGCTTTGTGTCGGGGATACGGTCCCCACCCTAAAGATCCTACCTCCCTCCCCAGAGACCTCACCCACCCAGCGGTGGAGCTCTTGTGTCTCTGCCCCCAGTGAGAAGGAGGAGCATGTGTACAGTTCTATTAAACGACACACCTCCTTTAACTCCGcctcctcttcctcgtcctcctctaAACCACCTACCAGCCGCTGCCAGTCTATCTGCTCATTGGGCGACCGGCAGCAGGAGAAGGAGAATGACCTTACCGGGTCCAACCGTGGCCCGGCTGTGGTCCAGAGTTCCTCAGAGAGACTCCATGGTCCCAGTAGTCTGGGCCGGGCCGGTCGGCAGAGCAGCCTCCCGGAGCGGTCCAGTTGCGGTCACGGTCACTCTGACCTCACCCTGCAAGATGGTCAGCAGGTGGTGGTCCTGAACCGTGCCTCCGCGCTGAGCATGCTCACAGCCACCCAGAACTACCTGGCCAACTTCAAGGacaatggtggtggtggtggctccAGAgggccagcccagacccagagtCTGCCCTGCACCCCGTTGAGGTCCTCCTGTGGGCTGACGGACCGGGAGCGTCTACAGGAGTACCTCTGGGCAGAGCAGCCGGCACAGCAGAACCAGCCCAACATCGTCCAGTCACTCAGAGAGAAGTTCCAATGCCTCAGCTCCAGTAGCTTTGCCTGAGTTGCCATGACCACCCATAACACACCACCATATGAACATACTAGTAGATGTAGTTTAAGCAAGTCTGTAGCTTTGCCTGTCTCATGACAACAAATAACACTAAACggctggaggtttgttaacagggAATGACACACTAAATGGTCAATTCAACACACTACTGTACGcacaacactacacaccacacaggtCTTTAGCTTTGCCAGAGTCTTCAGGACAAAAAAGTACCAATATGCATTTTTGCCTGATTCACCGGTACAACGTCACACGCAACATGCAATACTGCAGCTTTGCCAAAGTCACATGGGCAAATTTCAACATATCACAAAACAACATGCCAAATACTGCACTTGAGTAGTCATGGCAACATACATGTACAGGAACATATTAGTACTACAGAGGCACTCCACCGCCGCAGCACTTTTTACAGTCTTCCATGTCAAGCAGATTGACTTCCGTATCTATTTTAGATAAGTTGAAAAATAACTATGAAACGGTCAGTTATCATTTTAGCAAACTGGATGATATTCCTGAGTACAACAGTGTAGCTAGGGGCTCAGAGTGTATGGGCTTAACAACTTAAAGGGAAGCATACAGACCCATCTTTTAGAGATTTTGGAAATTAGTATTCCATGTACTGTACAGATATTTCTGCTAATTATAGTTATCtgttatagtagtaatagtaagaAATAGATAACTATCCATTCATTCTAACTGTTCCCCCTTCAACAAAAATACTGACATCCCAAAAATGTAATTTGGTACACTGCTGCAGTCTGCTAGCATCTCTTGATGAGGAAATGGCACTGGCTGAATTTGAGTTGTTGCTGTAATTTGCTCTTTTGAACACCATGTCATTTTAGTTAACAACCATCTAATCAAGGTTTTCAACTTTTGTTTGAGTTACTTTTTAAAGGTTGTTTTAGCGTATTTAACTTCCTATAGCTGAGCTTACCCCTTATCAGAGGGATGATCCTATGTGACTAGTTGTCAGTGGTACTGTTTTAACTGTGCATAATACAGTGTCAACCAATTTAACACAATCTGTGCAAGCAGCTTAATGAATTTGCAATTAGCTCAGGATTATAGGCTAGGTATGGACAGTTTATCAGCAATAATATAAAGAGGATCCACACATAGTACCTTGCTGTTCATTAGGTTGAGTATATTTTACATTGGGCTGTGGTGATGTAAAGCAGTAGATAGCCTATACCAGTCTTAATATAATGATTGGGTTTTCTCAACCTGCTCAAACGCCTTGGTCATGACTAGGGGATCACGCTTTAAACAGAAAAATCTTAAAATCAAGAGAAAAGTGTGCTGATATTCAATAAGCAGCCGCGATAGGAGTTATCTATTTATTTTGAATCTGTGCGTCTGAAAATGGTAATAAGTATATTTTAGTCTTCTACATACACTACGTAGGTTGAGTGGCATAGTGCATCTTAATAGGAAGAacctaaaatgttattttatcttATTCATTTTAAAACGTTGTTTCTAAGAGGGACCATGGAGGAGAGCGTTGAATGAGTGAATGAATGAGTGTTTTGATGTACATTTCTCTTCAACCTCACAGAATTTCGGGTCAGATTTCTTGTTTACTTCATGGGACACCCCTCACCTTCACACTACTGATCAGCACCCCACCCTTCCCACTCCCTTTCTAAACACGTTATGCCTGAATATCATCCTGATTCATTCAAATATTCACAATAATGTCATGTTAGGGTAGATTGTCACATACATTGAGTTTACTTTTTGTTTTAACTCAGACATCACTGAACAGTTTCAGTAGTGAGGATCCACACTTATTGAGAATTTGTTTCATGTTTGatctcatcaatcaatcaatcaatcaacttaCAATGTCTTAtttatttacaacaacaaaaaaactattcTTGACCCCCACACATCACTATTATGAACCGCCACAGCCAGTTTGTAAATTAGAATAATAACTTTGTTGGCTTCTTGATGAATTTCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU381026 lncRNA upstream 130688 27044702 ~ 27045693 (+) True G336550
TU380995 lncRNA upstream 197982 26978187 ~ 26978399 (+) True G336519
TU380931 lncRNA upstream 281544 26892229 ~ 26894837 (+) False G336464
TU380933 lncRNA upstream 281544 26892981 ~ 26894837 (+) False G336464
TU380918 lncRNA upstream 281544 26893135 ~ 26894837 (+) False G336464
TU381134 lncRNA downstream 21859 27206829 ~ 27213254 (+) True G336650
TU381193 lncRNA downstream 111576 27296546 ~ 27298077 (+) True G336705
TU381197 lncRNA downstream 117702 27302672 ~ 27305939 (+) True G336709
TU381216 lncRNA downstream 142909 27327879 ~ 27333502 (+) False G336723
TU381220 lncRNA downstream 142909 27327879 ~ 27331504 (+) False G336723
XM_021600696.2 mRNA upstream 171762 26998492 ~ 27004619 (+) False LOC110522356
XM_021600695.2 mRNA upstream 171762 26998493 ~ 27004619 (+) False LOC110522356
XM_036976024.1 mRNA upstream 171762 26998545 ~ 27004619 (+) True LOC110522356
XM_021600700.2 mRNA upstream 214533 26935835 ~ 26961848 (+) True snx3
XM_021600702.2 mRNA upstream 419837 26686142 ~ 26756544 (+) False sesn1
XM_021600692.2 mRNA downstream 1495 27186465 ~ 27195351 (+) True tcp1
XM_036976031.1 mRNA downstream 217127 27402097 ~ 27521982 (+) False LOC110522432
XM_036976030.1 mRNA downstream 217127 27402097 ~ 27523782 (+) False LOC110522432
XM_036976032.1 mRNA downstream 217127 27402097 ~ 27523782 (+) False LOC110522432
XM_036976040.1 mRNA downstream 217127 27402097 ~ 27523782 (+) False LOC110522432
TU380919 other upstream 281544 26893135 ~ 26894837 (+) False G336464
TU380920 other upstream 281544 26893135 ~ 26894837 (+) False G336464
TU380925 other upstream 281544 26893135 ~ 26894837 (+) False G336464
TU380927 other upstream 281544 26893135 ~ 26894837 (+) True G336464
TU379995 other upstream 1118690 26051053 ~ 26057691 (+) True LOC110522376
TU381324 other downstream 405882 27590852 ~ 27601556 (+) True LOC118964415
TU384407 other downstream 1673746 28858716 ~ 28859155 (+) True G339660
TU384441 other downstream 1729629 28914599 ~ 28915539 (+) True G339693
TU384628 other downstream 1981548 29166518 ~ 29166996 (+) True G339830
TU384729 other downstream 2150399 29335369 ~ 29336939 (+) True G339928

Expression Profile