RNA id: TCONS_00030623


Basic Information

Item Value
RNA id TCONS_00030623
length 3007
RNA type mRNA
GC content 0.43
exon number 9
gene id XLOC_015270
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11923615 ~ 11945936 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGGGCTATGTCTCACAACCTAGTACACTGCCTACATAGACGGCGTTTTAAGGAATGAACAGTGTTTTCCGACTCCAAATGAGAATAAACTATCTATATACACCTCAAATTATTATAACCCAAACGTTTAGTCTTAACTAAACAGATGCAGATCACGTTCCAATGCTAGCCAGTGATGTCTACCTAGCAAGGGAACTAGGTTTTGAGCTACAGCCATCGTGTAGTCGGGAATCTTCGCACTGCTCTTCTTCTTTGAGTCTGATTTTAAGGGAGGAGCTGTAACTCTCGGAACATCCAGAGACTTTTGGAGAAGGACAACAACAGGACGGCTAATTATGGATCCAGCATCTCATCCAGAGCAGCTGTCAGTTGTTAACGAACAGGTGCTGAACTCGGCGGACAGATCAGTGACTGCAGCTGTATGTCTGCGCCGCTTCCTCTGCTACGGCTCTGAAAGCTCCACATACAGCACTAAAGAGTGTCCTCTGGGCATCGAGAATGCCCTCTCCTTAATGCAGCTCATCGAGGGGGGTCGTGGGTCTGAGGTGGTAGACGAGGTCAGACGCTTCAATTTGGAGGGCCGCGCTGTCCGTCCAAACCCCGGCCTCTTTACTCTGGCTGTCTGCTCGCAGCATGCAGACTGTAAAACTAGACAGGCCGCTTTACGGGCACTGAAGGAACTCTGCCGGTCCCCCATGCAGCTCTTTACATTCGTGCAGTATAAGAAGGAGTTGAAGGAGGGCTCTGGGATGTGGGGCCGGGCTCTGCGGAGGGTCGTGACTGATTGGTACAATGGTCAGGATGGGATAAGTCTGGCGCAAGCAGTGACCAAGTGCAAGCACAGGGCAGGCTGGTCCCATCAGGACCTCCTCAGACTGTCCCACATGAAGCCTGCTAATGACAACATTGCTCTCGTTTGCAAATACATCACGAAAGGATGGAAAGGGGTTGAGGAAGCATATGCTGAGAAAGACAAATCTGAGGATCTGCAGAAGGTTTTTGCGTATCTGGAAGCTGTTGAAAAAGTCAAACACTCCACTGATGAACAGGAGCTCATTCATCTGATTGAGGAGCAGAGACTGGGGAAAGAGCAGCTTCTCACCAACCATCTCAAGTCCAAAGAGGTTTGGAAAGCATTGCTCAAAGAAATGCCAGTGGCTGTTTTATTGAAGCATTTGGGGAAGTTGACAGCAAACAAAGTTCTTATACCAGGAAGTCCTGACATTGCTGCTGTTTGTGGGAGGATTCAGGAAGAGACTGTTCTGAAAAAGgcCAAAACACAGCCATTCAACATACTTGCAGCGTCTGAAAACTATAAGAGAGGTCACGGGAAGCGTAGCAAGCTGAAATGGGAGCCAGATAGAGACCTTGTTCAAGCACTGGACTGCGCGTTCTGTAAAAGCATTTCAACCATGGAGGCCACAGGCAAGCGGTTTTTGGTGGCTGTTGATATAAGTTCCTCTTTGAGCAGTTTGTGTCGCGGCAGCTCCATCAGCACTGTGGCAGTAGCGGCGGCAGTGTGTATGATAATTGCTCAAACAGAGCCAAACGCGCAGATTGTGGTTTTCTCTGAAGGAAACCTTCTTCCCTGTACTGTCTCTTCTGATATGACATTAATGCAGGTAGCAGGACTGCTAATCCAGACTCCTGGTGGTAGTACAGACTGTTCTTTACCCATCACCTGGGCCTCGGAGAATGAGAAAACTGTGGACGTCTTTATCATTTTAACCAATAATCAAACCTTTGGTAGAGAAAATCCAGCTGACACTCTGAAGATGTATAGACAGaaaagCTCTGTATTTTCAAAACTTGTTGTGTGTGGGTTGATTGCCAACAACCTATCCATCGCTGACCCTGAAGACTGCGGCATGTTGGACATCTGCGGCTTTGACTCGCAAGCAGTGGATGTCATCCATAACTTTGCACTCGACATCTTTTAAAAGCTATTGATTTTGTAGCATGGGTTGTAGATTTTCTGAATGACAAAAAGACATTAATGCACCACCCatcaacatgcaaaaaaaaaaaaacattgtaagcaGGTAATCATGTTGTATGTTTCTACATTTTGGAATCAAGTCTCCAAGTCTAATTCGATATCCAGCAGGCTGGATTAAGTTGCATTGAAAATCAAGGGGTGCACATTTAAGACTTCATtcagtatactgtatattttctAACCTGGTCCTGTGAAATATTTGCTTCTTCCCAAAAAGAGTGTAATCATCTTTTACATGTTTCTTTTTGAAAAGCTCATGCATGTCACTGACCTTCATTGGAAGCAATGTTCTGTATTTTAGAGGCCTTGTTCATTGCGTGTAATATCTTTATGTAATACGATGTTATGAATTATTACATATTGAGCTGAAAGTGCACCATAGGTCTTCCACAAAATCTGAGAGCTGAAATGCATTCGCAGTTTGTCAGTGAAATTGAAATCAAGCAATCTGATTCTCTCAGAAATTGATGTAGCCTAAACTACTAAACTCGTCGGTAAAGTTTTAATGTTGATATACCTCAAGTGTTTTGTGGTCCAGTAACTTGATATATGAGTGAAAATAACCTTTTATATGATTCAAGAGAGACTTCACTGAATATTTTACCGCTTACTCTGGCACATTTTCGAAGTCAATAATGCTACATATGTATGTATtccaaaattgaggaaaaaaagagGTATATGTTTGAATAGAGGAAGTTAATAATGGATCTTGCTTCTAGATTCATTTCTGTTCAgcgttttttatgttttttatttagcattttctaTTGTTCTTTGTGCCTCTTAAGGTCAAATCAAGGTTGTAAGTTTGCTAACGCTGCTAGGATAATAATATCTATGTAATGAATTGTAGGCACAACTAACAAACACTAAAACGTAGACAATGACTGCTTGTTAGTTTTGAGATACAATACTGAATGTACCCTTGTTCTGTTTGTGTAACATTAGATATTATTTAATCGAAACCTTGAAGTATGAGGTAAATAAACGTGACAAATAATGAAA

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-051113-300 Predicted to enable RNA binding activity. Predicted to be located in cytoplasm. Predicted to be part of ribonucleoprotein complex. Orthologous to human RO60 (Ro60, Y RNA binding protein).

Ensembl:

ensembl_id ENSDART00000126118

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030618 lncRNA upstream 274777 11648163 ~ 11648838 (+) True XLOC_015267
TCONS_00033490 lncRNA upstream 290292 11629002 ~ 11633323 (+) False XLOC_015266
TCONS_00033491 lncRNA upstream 290292 11629011 ~ 11633323 (+) False XLOC_015266
TCONS_00033492 lncRNA upstream 290292 11629043 ~ 11633323 (+) True XLOC_015266
TCONS_00030616 lncRNA upstream 713933 11208463 ~ 11209682 (+) True XLOC_015264
TCONS_00033493 lncRNA downstream 689991 12635927 ~ 12637877 (+) True XLOC_015274
TCONS_00030635 lncRNA downstream 852430 12798366 ~ 12802906 (+) True XLOC_015275
TCONS_00033242 lncRNA downstream 901724 12847660 ~ 12852426 (+) True XLOC_015276
TCONS_00033243 lncRNA downstream 1401464 13347400 ~ 13351251 (+) False XLOC_015280
TCONS_00033494 lncRNA downstream 1401526 13347462 ~ 13351299 (+) True XLOC_015280
TCONS_00030622 mRNA upstream 90259 11760548 ~ 11833356 (+) True XLOC_015269
TCONS_00030620 mRNA upstream 90331 11685742 ~ 11833284 (+) False XLOC_015269
TCONS_00030619 mRNA upstream 245910 11670270 ~ 11677705 (+) True XLOC_015268
TCONS_00030614 mRNA upstream 713447 11205795 ~ 11210168 (+) False XLOC_015264
TCONS_00030615 mRNA upstream 714867 11206317 ~ 11208748 (+) False XLOC_015264
TCONS_00030625 mRNA downstream 618 11946554 ~ 11998297 (+) False XLOC_015271
TCONS_00030626 mRNA downstream 618 11946554 ~ 12003175 (+) True XLOC_015271
TCONS_00030627 mRNA downstream 309632 12255568 ~ 12280508 (+) False XLOC_015272
TCONS_00030628 mRNA downstream 309639 12255575 ~ 12280469 (+) True XLOC_015272
TCONS_00030630 mRNA downstream 356591 12302527 ~ 12405209 (+) False XLOC_015273
TCONS_00030621 other upstream 158617 11756924 ~ 11764998 (+) False XLOC_015269
TCONS_00030617 other upstream 679608 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030605 other upstream 916825 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030590 other upstream 1717497 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030577 other upstream 1940662 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030632 other downstream 430886 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030633 other downstream 448687 12394623 ~ 12394983 (+) False XLOC_015273
TCONS_00030634 other downstream 455319 12401255 ~ 12404031 (+) True XLOC_015273
TCONS_00030641 other downstream 1177630 13123566 ~ 13123682 (+) True XLOC_015279
TCONS_00030650 other downstream 2714420 14660356 ~ 14660546 (+) True XLOC_015290

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_02812936_02825192.mRNA True 1762 mRNA 0.49 9 CI01000004 2812853 ~ 2825192 (-)