RNA id: TCONS_00030620


Basic Information

Item Value
RNA id TCONS_00030620
length 9009
RNA type mRNA
GC content 0.49
exon number 34
gene id XLOC_015269
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11685742 ~ 11833356 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACAAACGGTACGTGACGTGACAGAACGTACAGTCAGTCCAGCCGACGTCATATCGAGCTTCCCAAGCAGTCAGTCAGTGCGCGAGAGAGGCAAAATGAAGTGAAATCAGCTGAAAGAGAAGCAAGAGAAAGATTAGCTCACACATCTGGACGAAACcgataacctgctcacctaattcGGTGCAGGAGTACTACAGTTACACTTTGATATACCATGGAGAAGAGGTGATCTTGTTCTTCTGCAGCTAAAGAAATATAATCAAAGATCATGGGAAATTCATACGCGGGGCAGCTGAAATCTGCTCGCTTTGAGGAAGCTCTCCATAACTCAATAGAGGCTTCATTAAGGTCAAGCGGTGGTGACCCACAGCCGGTTTTCACACAGCTATATCTCGAGCCTGATCAGTATTCTGGCCATGTAGAAGATATTAAGCCCAAAATGGACCTAAGCCTGAGATCCGACCCATCCACCCATGTGCTTGTGAAATGCCACTCTTCAAATTCTGTAGAGGATATGGATGACGAGGACGATTCAGACACCAGCAGCCCACCATTGCCTTACCTGCAGGGACCCCCTCCTGATGGCTGCTGCACTGTTGATGGTTTCTGTCAAGCAGGAAAAGATCTGCGCCTGGTTTCCATGGCAACAGAGTCTATCGAGGTTCCTGCAGGGTTTGAGCTGGTCGGTGCCAAATCGCCCAGCATCCCAGAGCACATCCTCGTCTGTGCAGTGGACAAGCGCTTCCTGCCAGATGAGAATGGGAAAAATGCACTTTTAGGGTTTTCAGGGAACTGCGTGGGTTGTGGTGAGAAAGGGTTCCGTTACTTCACCGAGTTCTCTAACCACATTAACCTGAAGTTATCCACTCAGCCGAAGAAGCAGAAGCACTTAAAGTACTACCTGGTGAAGAACTCTCAGGGTGCTCTGTGCAAAGGAGCCCTCATTTGCTGGAAAGatTGTAAGACACGACCATTCTCAAACAGTGCTTCTTCATCCAAGCCTAGTTCCTCATCCTCACTAAGCAGCAAAGAAAATGGAGACACAAATGGCCACAGTCCATCTCCCTTCCCCCTCTCAGACTCGCCTCCTGCCCGCATGCAATCTGGCTCATCCTCAGGGATTTTTGGACCCCAGGAGCTGGGCTTCCTTAAACCATTGAACACACCGACCCACGGGACCAAGACATTACCGATCGtTCCCACTGCCCTCCGAGTGAATGGTCTAACTAATGGTCTCAGTATGGATGGACGCTCCACTCTACTGAGCCCACCTCGTACAAACCCACTCTCCACCCCTAGTCATGGCTATAGAACCACAGAAACAGGAGACAGTCCAGCATCCACTGCTATGTCGACAGGTCCACCAAAAAAGCGGCATCGTAGTTGGCATCCCACCACTTTAGTGCCCATCCCAGCCACAGCTGTTCCTGTACCAGCCATCCGACCGCTGACCTGCAGCTCTGGTCCTTTATTGTCACTGTCCAATCAACAGCCTGCATCGGTGTCAGGGGTCATACAACCACAGCCAATCACAGCTGGAGAAACGGTCATCATTCCTGATAACCTTCTGAACTCTTACGGGGTCCGGCCAGTCCTTCTCATTGGTCAAGGCACTTTACCATATTTCTTTGGCAATGTGGGTGATCTGGTGGTGAGCCCCCTGCTGGTGAGCTGCTACAAGGGCAGAGAGCTCAACGAGAAGACCCTGGCCAGCCTGGGCATGTCAGCAAACCAGTTACTGACCACAGAGACCATGATACTGCTCACACTGCAGTACCTCGCTCGACTGGGTACAGAGCAGATACCGTTACGGGAAGAGTTTGAGCAAATCATGTTGAAGGCTATGCTGTGTGGTCCGACTGGCCCTCCAGTGTCGCCTGCGCAGCTGCCCTGGTTAGCCCGAATGGAGGCCAGTGTGTCAGGGGGCAGTGTTCAGGTGCTGGTCACCCACGGCTCTCTTGGTGAGGGTATCTCTGAGTCTCTGCGCTCACTGAGTGAAACATCACCACAGCAGCAGCAGTGTCTCCCCAACTATGTGCTCATTATCTGCACCTCCAAAAGTGGAGCCAATGAGTTCTGTGTGCTCGTGTTGGGTAAGTATCAGTCTCGAGCCTTGGCAGAGAGCATGCTGTCTACAAACGAGTTTCTGAAGGAGATCAGTTATGAGCTCATCACAGGGAAAGTTAGTGTACTAGCCTCACACTTCCAGAGCACCTCTTTAGGTGACAATATGGACAAACAGCTGGTTCGTTATCAACGTAAACGCAAAGACAGGGTGGTTCAACCTTTTCAGGGGCATCTCACCGAGTACATCCACTCCCAGGAAGCTGCGACCATGATACCAGAATCAGGGCCAGATCTGCTGAGCGATGACTTTCAGATACACCCTCCTCAGTTGAGCGTTGCACGAAGCCTTTTGTCACAGGTTTGTGCTATTGCCGACTCAGGGAGCCAGAGCTTAGATCTGGGCCGATTCTGCAAAGTAGACTTTCTGATTCTGGTGCCGCCCTCCCATGTTCTGGTTCACCAAACAGTCCAGCGAATACGACAATCAGGCGTCCTAATAGATCTCGGTATAGAGGACGTGTCATTAGCCATGCAGAAGTCTGACAAGTATGTGGTGCGTCTGGACACAGAGGTCCACACAAAAATGGAGGCCTTTATGAGGAAGGTCAAGCAGAACCCTTATACACTCTTCGTCCTCATTCATGACAACTCGCACGTGGACTTGACAAGTGCTCTTTCAGGGTCGGTTTGTCATGGGGAGCTGCAGGGATTGGCTGATCGCGTGGTGAACTGTCCAGAGGTTCTGGAAGCAATAAACTTACTGGTGCTGCAGGTCAGCTGCTTCCCGTTCACCCTGCAGAGCCGGCAGTCACGAATCAGTACCCAGAATGAAGTGCACTGGCCCGACACTGAGAACCAGCAGGGTGAAGCTTCTCCTAAAGACTTGATCTACTTTGGGCTGAAGGACTACAGCAAGTCTCTGCAGTGGGGAGTGGCGAGTCCAATTCTGCGATGTGATGACGCCTTTGAGCGGATGGTTAAAACCCTGTTGGAGAGGCACCCACATTTGCACAGTATGGTGATCCGCAGCTACCTGTTGATCCAGCAGTACACAGAGGCTCTGATGGCCCTCACAGCGGCCCCTTCTTTGCGGGATCACGTGACCCCTCAGACACTTGCCATGGTGGAGGATCTGCTGAGTGTGCCAGGCCGCAGCAAGCATGGGTGCGGACACATGCTGCTGGTGCGTGTGCCTTCTCTGCAGCTGGCACGACTGGCACAGGAGCGGCTGGAGGAGGCTCGGGACAAGCTGGGGCTGCAGTACCGCTTTGCCGTGCTGCTAGGAAGCCCTGCTGCGGAGATCAGCCTGCCGGTGCACTTCTGTGCCCGTCTGCGGGCTTGGAGGGGCTGTAAAAATGAGGAGTGGGTCCCACATACATATGAAGATCTGGAAGGACTTCCATGCATTGTCATCCTCACTGGAAAAGATCCTCTTGGAGAAACCTTCCCGAGGTCTCTAAAGTACTGTGACTTGCGGCTGATTGACTCCAGCTACCTGACACGCACAGCGCTGGAACAGGAAGTGGGTTTGGCCTGTTCATATGTGACACGTAGAGTAATCCCTAAGACCAAAACTGCCACAAGCAGAGAAGAGAGACCGAGAGAAGGTGAAAGGAGCTCTGGAGAAACAGCAGAACACGATGATCTCCCTATGGAGCTGGAAAGACCACCCAGCAATGCCAGCGCTGCTACTAGGACCTCCGGCTCCACCACAGAAAATGGTGTCAGTTCCTCAAGTATACTTGACAAGCCATCCTCGCAGAGTGACCCTTGTGGAAGCAGGACTATGATGGACTCTTGCTCCTCTCCTGTTCGCTTCAAGCAGGAGTGCGACTCTCAGGCTCCCTCATCATCCAGCACGTCCTCATTCTCCTCtgcttcctcctcctcttcttcttcctcgTCTCCGGCAGCTCAGAGACCGAGTCAGTCTACACAGGCTCCACGTGAATGTAACAGGACACAGGTCTTTCCCCGGACGGCGGTGCTGTCTCGGGCTGCGTATACCCTGCTGGCTCCTGAAACTCTGGGTCATCCCAGTTCTGCCTCTCTGCTGCCACATGCGGATGTGTCGTGGAGCAGTCCGCTCAGACCACCGGTTCCTCATGGCCTTGGTGGAGCAGAGCAGTCCCTCTACTATCGTCAGTGGACCACAGCCAGGCAACACCACGCTGATTATGAAGGCCCAGTACCCCATCCCCACCCAAGAAGACTGCTTCTGAGCGGCCCACCACAGGTTGGAAAAACAGGTGCATATCTGCAGTTCCTACGAATTCTGTTCCGTATGCTGATTCGCCTTCTGGAGGTAGATGTTTATGAtgaagaagagctggaggaagATGTGCAAGACAAATCAAAGGTTCCCCCTTCTAGTGGGCCACAGTGGCCTGATGTGGAGGACGTCCGCAAACTAAGATTTGACCTCTGCCCTCATGACTGCAAGTTCAAATATTCAAGTCCAGTGTATGCCAACAGGATGCCAAAAACACAGAGTGGGGTTAAAACCGAAAGACTGGATACAGAAGCGGACCCACCAAAGAGAAACACAGTATCTGTTAGACTCAGCCTTTTTGCAGCCCACAATGCATTTCACCACTGTGAGCAGTGCCACCATTACAGTGAACCTATTCCTGCTGCTCAGcTCTCTGACTGCACCTTCCACGCTTTCACCTTTTGCTCATCTATGCTGGGAGAGGAAGTCCAGCTGCACTTTATCATCCCTAAATCCAAAGAGTCTCATTTTGTGTTCAGCCAACAGGGCAGTCACCTAGAGAGCATGAGACTGCCTCTGCTTTCCGACAAGGAGTCGGGCATGATGAAAAGCCCAATATTCACCCCAACCACGGGCCGCCAGGAGCACGGCCTTCTCAACATCTACCATGCCATGGAGGGAGCCGAGCACCTGCACATCCTGGTGGTCAAACAGTATGAAATGCCACTCTATAGGAAATACTGGCCCAACCACATCCTGCTGGTGCTGCCCGCCATGTTCAACAACTCAGGAGTCGGTGCGGCTCGATTCATGATCAAAGAACTGTCCTATCACAACCTGGAGCTTGAGAGGAACCGACAAGAGGAGCAAGGCGTCAAACGGCAGGACGTGTGGCCCTTTATCGTAATGATGGATGACTCCTGCGTCCTGTGGAACGCCCAGCAGCCTGGACCAGACGGCAAAACcgAGGTGATGAACGTGTCTCTGAAGAGCGTCTTGCAGCACATGGAAGCCACTCCAAAGATCTCCCAGTATGCAGTTTGTGGCCTGCGCAAATGGAGCAGTAGTTTGTCTTCTCAAGCTCCCACAAGCCCTTTCTCTCGCTGTCATCTCCACGACCTCATCTTGCTGAATGTTGACCTCACACAGAACGTCCAGTATGACCTCAATCGGTTCACATGTGAAGAGGTGGACTTCAACCTGAGGGCAAACAGCAGTGGTCTTCTGCTCTGTCGCTTCAATCAATTCAGCATCATGAAGAAACACATTCCCATCGGAGGACATAAAGACTTCCTCATCAAACCCAAGCTCATGAGAATAGAGACGCCGgtgcgtgtgtgtgcgtctcAATATGTGTGCGCTCCGGACAGTGAACAAACGTTGCTGGCTGCGCCAGCTCAGTTCCTGCTGGAGAAGTTTCTGCAGTCCTGTAGCCATCGGCTCTTTCCTCTGGCTCTCAGTAACAGTGCTAACCCTGTGTTGTCCATAGACAGCTACCTCAACCTTGGACCAgagGTTCAGGTGTGTTATGTGAGCTCGCGACCTCATTCGGTGAATGTAGATCATCAAGGTGTCATTTTCAGTGGCCTGCTGCTCTACTTGTGTGACTCCTTTGTCGTTTCAAGCCTTCTAAAGAAATTCAACTTCCTCAAAGGCGCCACGCTGTGTGTGATCTGTCAGGACCGGAGCTCTCTGCGTCAGACTATTGTACGTCTGGAGCTGGAGGATGAGTGGCAATTTCGCCTGCGAGATGAGTTTCAAACGGCCAACTGCAGCGAGGACCGTCCGCTCTACTTCCTCACAGGACGACATATCTAATCTCCAAATTTCCATTTACCTTTAACTCTTTACCCCCAAACACACAAGACGTTTTTCAAGCTGAAAACTCTAGAGTTTCTGCCTCTGAAGAGAATATATTAAAGGCTCATTCACACTATGAGTTACTCACAGTGGCAAAGCGACCATTCATTTCAACTGAGAGTGAGCAACCTCCGTCGGCTTGAGCAACAGTGACCGTTGGTGATCAGGCAACAAAGTTAAGAAACCTTCAGCTTTATGCAAATGAGGAGCAACTTTCTTGAGCAACAGCCAATAGAAGCACCATTAGAGCTCACATGATCTTCTCTAAGCTcgctcagaggccggttgtattctcCGTGCTATAAACCTACAAAGAGCTGCGTTTGCAGCAAATTGCCACCAAGAGCGACAGGCAGCTCCAAAGACACTGCttgtgtgaatgaggcataagaCTTGAGATGCTACCTTGGATGAGGTTTGAGGATAGATACTCTGGAGTGTGTCCAAAAGAACAGATACTGTGCTGGATACAGCTGTTGTGCGTTTCAGTTTTTGTACGTTTTAGAAAAACATTGAGAACTTTTTGGTGATTTTGATTTTGTGTGTATTATCACGCAAGGACAATGCGAAGGACAGATATGTCCTTCTATATATCTCAGGGTTTTTTGTCTGAAGACAAAATGACTTACTACTGGTTTCCTTTCCTCTCCCCTGCTTCATTTACTTCTCACGCCATCCAAAAAAGACTGATGAACTCctcaagcctcattcacactatgagcGACTCGCAGTGGCAAAGCGACAAGCAACTTCTCATTTCAATGTAAAACTAGTGTGTCCTACACAAGCAACATCGACCCTTGGTGACCAGTTGGATAAAGTTGAGAATCGTTCAACGGAAAACAAGTGACTTCCGGCGACCTCCAACTACGCAAGTGGCATCTACCATTGGAGACCAGGTGGACAAAGTTGAGAATCGTTCAGCAGAGAACGAGTGACTTCTGGCAATCTCCATCTACGCAAGCGACATCAACCGTTGGCGACCAGGTAGACGTcgctcagaggccggttgtattcgTGCTGTAGCCttacacagacctgcgtttgcagcaggtAACCACCCAGAGCAACagacagctacaaagtcgctgctagtgtgaatgaggcatcgCACTACAAGTGACTCGCAGAGGCAAAGCGACAAGCGAACATTCGTTTCAAAAGGAGAACGAGTGACTTTCGGCGACCTCCATCTACGCAAATGAAAGCGACCGTTAATGACCAGGTGGGCGTGCCATGCGATATgtcaaagttgagaatccttcaacttcaTGCAAAcaaagagcgactttcttgagcgacagccaataggagcaccagtgaTCCTATTTCAGTTCCTTCAGAGGCCAGTTGTATTCTCCGTGCTGTTGACCCACACGGACCTGCAtttgcagcaggtcgccacccaAAGCAAAAAACAgttacaaagtcgctgctagtgtaaACGAGGCATCACACTATGAGCGACTTTTATCTGCAAAGAAACAAGCGACTGCTCATTTCAAAGGAGAATGAGCAACTTCTTGGCAACCTCAATCTTAGCAAGCGACAGCAACCATTGACGAGCAGGTGTGCGTGTTGAGCTACTTTGTCGCTGCTAGTGTTAATGAGGCATCACGCTGGAAGCTCACACAATGGCTGGTGATACTAGGTTTGTTGCATTTCAGTAATACCAACATATGTCATAAAGGTTCCGATGTCTAAAAATCTTATAGTCTTTTATCTCGCCAAAGACATTACCTTACGCTAGCAAAACAAGTTCAGCATTTCAGTGAACCATAAAGTCAATTACTGATGTCAAAGTCTGCTATTTCCGATACAACTAATGATGTTTTTTATGATTGTAAATGTTAGATGATGCAAAGGTACTTTTATTTGAAGTAAGCATCTACTAGTCATCAGATTGCAGCTTTTTTTGAGGTAGCTGGGTACAGAGTTGCACACTGTAAATGCCTTAAGAAACTATGACATTAACATCAGAAGGGTCAATTAATTTCAGTCAAAACATTAAAGATGTTGCCTATTTTGTGTGGCTAACTAGCTAGTATGCTAGCTAGCATATATGTCTGATCAAATGAATGTTCTAGACAGATTTATCTTTTGGTGTTTATGACTTTTTGGATGTTAAAAGAAAaatctttgtttacattttaagaaatgGCGATATTAATATATACGACAGACTATTTTGTCACTTTGAATTCTGGCTAGTTTTACTGAAGAGTCACTTTGAACTGAATGTGTCACAGATCAGAGatgttcttttatttttccaTGACACAATGAATCTACCTAGGACCCATTGGATTCTGTTTTTGgagtgatttatttaaaaattagatGAATGGATCCCTTTTTTTAgggattgttttatttattaaacaagctTCTTGGGACTGATAATCATTGAAATAGGTCAAGTCCTTCAATTCATCGCCAAAACCTTTGCACACTTCCATCAAAACTAGTATGTACAGATGATGTATTAGAAATGTACGAATGTAAACAAGAAGCTGTACAAATAAATGCTTTACCAAATGGAGTGTTTAGTATGAGAGGCATCAGGTCCTGCGATGATACTGATTGTAACGATGAAGAAAGCCAAATACCCACTGGACAACCTTTAGAATGTGTCTCACTTGTAGATAATTTGATGTGCACATAAATTATGCAATTTGCTTCTCACAATCTTTgcattttgtttctgtcagctgtGAATATTCTCAACATATGTAGCACCAATCCATTTGAAATCGTCTACCTCATGATCTACTGGCCGACTGTGGTTCAGTGAACGTTTGATTTCAGATACATGTTCGTTTTGCAGTTGAGATGATGAATGTAATAAAGTGTTATTAACAGCCGTAAA

Function

GO:

id name namespace
GO:0048793 pronephros development biological_process
GO:0007275 multicellular organism development biological_process
GO:0001822 kidney development biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4022 Involved in kidney development. Acts upstream of or within pronephros development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in central nervous system and mesoderm. Used to study renal agenesis. Human ortholog(s) of this gene implicated in autosomal dominant nonsyndromic deafness and renal agenesis. Orthologous to human GREB1L (GREB1 like retinoic acid receptor coactivator).

Ensembl:

ensembl_id ENSDART00000138562

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00030618 lncRNA upstream 36904 11648163 ~ 11648838 (+) True XLOC_015267
TCONS_00033490 lncRNA upstream 52419 11629002 ~ 11633323 (+) False XLOC_015266
TCONS_00033491 lncRNA upstream 52419 11629011 ~ 11633323 (+) False XLOC_015266
TCONS_00033492 lncRNA upstream 52419 11629043 ~ 11633323 (+) True XLOC_015266
TCONS_00030616 lncRNA upstream 476060 11208463 ~ 11209682 (+) True XLOC_015264
TCONS_00033493 lncRNA downstream 802643 12635927 ~ 12637877 (+) True XLOC_015274
TCONS_00030635 lncRNA downstream 965082 12798366 ~ 12802906 (+) True XLOC_015275
TCONS_00033242 lncRNA downstream 1014376 12847660 ~ 12852426 (+) True XLOC_015276
TCONS_00033243 lncRNA downstream 1514116 13347400 ~ 13351251 (+) False XLOC_015280
TCONS_00033494 lncRNA downstream 1514178 13347462 ~ 13351299 (+) True XLOC_015280
TCONS_00030619 mRNA upstream 8037 11670270 ~ 11677705 (+) True XLOC_015268
TCONS_00030614 mRNA upstream 475574 11205795 ~ 11210168 (+) False XLOC_015264
TCONS_00030615 mRNA upstream 476994 11206317 ~ 11208748 (+) False XLOC_015264
TCONS_00030613 mRNA upstream 559521 11119315 ~ 11126221 (+) True XLOC_015263
TCONS_00030610 mRNA upstream 622059 11031360 ~ 11063683 (+) False XLOC_015262
TCONS_00030623 mRNA downstream 90331 11923615 ~ 11945936 (+) False XLOC_015270
TCONS_00030624 mRNA downstream 90540 11923824 ~ 11944959 (+) True XLOC_015270
TCONS_00030625 mRNA downstream 113270 11946554 ~ 11998297 (+) False XLOC_015271
TCONS_00030626 mRNA downstream 113270 11946554 ~ 12003175 (+) True XLOC_015271
TCONS_00030627 mRNA downstream 422284 12255568 ~ 12280508 (+) False XLOC_015272
TCONS_00030617 other upstream 441735 11243886 ~ 11244007 (+) True XLOC_015265
TCONS_00030605 other upstream 678952 11006657 ~ 11006790 (+) True XLOC_015261
TCONS_00030590 other upstream 1479624 10206001 ~ 10206118 (+) True XLOC_015249
TCONS_00030577 other upstream 1702789 9973881 ~ 9982953 (+) True XLOC_015242
TCONS_00030571 other upstream 1810097 9875529 ~ 9875645 (+) True XLOC_015239
TCONS_00030632 other downstream 543538 12376822 ~ 12378603 (+) False XLOC_015273
TCONS_00030633 other downstream 561339 12394623 ~ 12394983 (+) False XLOC_015273
TCONS_00030634 other downstream 567971 12401255 ~ 12404031 (+) True XLOC_015273
TCONS_00030641 other downstream 1290282 13123566 ~ 13123682 (+) True XLOC_015279
TCONS_00030650 other downstream 2827072 14660356 ~ 14660546 (+) True XLOC_015290

Expression Profile

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