RNA id: XM_036977089.1


Basic Information

Item Value
RNA id XM_036977089.1
length 4849
RNA type mRNA
GC content 0.44
exon number 15
gene id LOC110522832
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 23623921 ~ 23678038 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTGTTTTTTGGGGGAATGGATTTAGTGACGTCACCCGAGCAGCCAGCGCCCCTTACAAGCGCGAATATGGCGTAGCTGATATAAATATGTTTTCGTCATAGTAAATACTACATTTTATTACCTTTACCAAGTTAGTTAGTAGTGTGATACTCGTTATTTCAACTAGCTGCTAGTGTTTTGAGTATTTCAAGCTGGATGGAAGGTTTGCCGCTAGAAGAAAAAATAAAGGGGCGGGTGCGAGTCATTCCTTGCTAGTTCCTACCTGACTAGCCAGTCTGCTATCGTTATAGCTTATCTAACGTTACAGGCTAGTGACACAGACAGTCCTCCAGGTGAAGTCAATTTAGACAAACACTagctaataatgataataattttAGGACATAGCTAAGACATTTTATAGTTAACGTCGTTAGATGTGGCTAGTGACGTTAGATGTGTAACAGTTATTTCTTAACGCTATTTTATTGCGctctgtaattaaaaaaaaaactttctgtAGTTAACGTTAGTTGTATTCATTTAGCTTCCTAGCTAGCTAGACAACACCAACAATGTCGGATAACCAGAGCTGGAATTCTTCGGGTTCCGATGAGGATTTGGAGACCGCGGAATCGGGAGTCGGACAGCCTGTTGTTGGAATCGCTGAGTACAGTGGAATCCTCAGCAAGTGGACCAACTACATCCACGGCTGGCAGGATCGCTGGGTGGTTCTGAAGAACAACACTCTGAGCTACTACAAGTCTCAAGACGAGAGAGAGTTTGGCTGCAGAGGGTCCCTGTGTCTCAGCAAGGCTGTCATCACTCCCCTTGAGTTTGATGAGTGCAGGCTTGACATCAGTGTTAACGACAGTGTGTGGTACCTGAGAGCCATAGACTCCGAACACAGACACCAGTGGATCAACTCCATCGAACTACACAGGGCTGAGTCTGGGTATGGTTCAGAGTCCAGTCTGAGAAGACATGGCTCTATGGTGTCTCTCACGTCTGCTACCAGCGGCTTCTCCACCACATCCACCTCCTCCTTCAAGGGCCACAGCCTGAGGGAGAAGCTGGCAGAGATGGAGACGTTCAGAGACATCCTGTGCAGACAGGTCGACACGTTGCAGAAATACTTTGACGGCTGTGCCGATGCCGTCTCCAAGGACGAGCTGCAGAGAGACACAATTgtggatgatgatgaggatgatttcCCCAACACTCGGTCAGATGGAGAGTTCATCCACAACAACAACGGCAGCAAGGAGAAGCTATTCCAGTCTCTGAGCCCTAAGGACATCAATGGGATAGATTTTAAGGGCGAAGCCATCACGTTCAAGGCCACCACAGCTGGGATCCTGGCCACCCTGTCCCACTGCATGgacctgatggtgaagagagaggacagcTGGCAGAAGAGACTGGACAAGGAGctggaaaagaggaggaggatagaggagggctACAAGTCTGCTCTCTCTGAGCTCAAGAAGAAGTCTCACTTCAGAGGCCCTGATTACGAGGAGGGGCCTAACAGCCTGATCAATGAGGATGAGTTTTTTGATGCAGTTGAAGCAGCGCTTGACAGACAAGACAAGATAGAGGAACAGtctcACACTGAGAAGTGGAGGATACAGAGGTCCAGTCCAGTTCCCCCAGGAGATGTCTACTCCACCATGGGATCACACAGATTTGCCGACAAGGTGGAGGAGATGGTGCAGAATCACATGACCTACTCGCTGCAGGATATGGGCGGAGACGCCAACTGGCagctggtggtggaggagggggagatgaagGTgtacaggagagaggtagaggagaacgGTATTGTCCTGGACCCCCTGAAGGCCACTCACTCCGTAAAGGGAGTGACCGGACACGAGGTGTGCCACTATTTCTGGGACACAGATGTACGCAACGACTGGGAAACTACTATTGAGAACTTCAACGTTGTGGAGACGTTATCAGAAAATGCTGTTATCGTCTATCAGACACACAAGagggTGTGGCCTGCCTCTCAGAGAGATGTGCTCTACTTGTCTGCCATGAGGAAGATCCTGGCTAACAACGAGAACGACCCTGACACCTGGCTGGTCTGCAACTTCTCTGTGGACCACGACAATGCCATGCCCACCAACAGGTGTGTCCGTGCCAAAATCAACATCGCCATGATCTGCCAGACCCTGGTAAGCCCACCAGAGGGCGACAGAGAGATCAGCAGAGACAACATCACCTGTAAAATCACTTACGTCGCCAACGTGAACCCGGGAGGCTGGGCTCCTGCCTCAGTCCTGAGGGCCGTGGCCAAGAGGGAGTACCCCAAGTTCCTCAAACGTTTCACTGGCTACGTCCAGGAGAAAACATCAGTGAAACCTATTCTCTTCTGAGGTTCACAGGACTCACTACACCACTGTCCACACAAGACTGTTCTGAACATAGCATACCATGACAACCCGAACATAGCTAGCCCTCATGCTAGTGTACACTAACTAGTCCTCATGCTTGGTCTTTAGCTCGGTCTCCAGCTAGCTTCAATGTAAGCCCTCATGCTAGCGTCAATGCTAGTTTCCCATTCTACACCTCATGCTAGTTCTTTATACTAGCTCGCTCCTCATGCTAGTTTCCTATGCTAGCTCCCACATTAGCTAGCATGCTAATGCAGAAAGACCTGTGAGAATAgcctaaatgtaaaaaataaaacaaatccctTTTCTGGCAGAGATATAATATATAAATGTATGCGTTAAGAAATTTATAAGAAAGCAATTTAAGACATAAAGAAAAAACATGGCTCTATTTTAGTCCTGCTTTTTGTAGTTGACCTTTTTTAAGAAATGGAGTGTTCCTATTTTGTGTTGATTTTGCTTTTTATAATAATCAGTGGTGTCACAGCTTACTCTCATGCTGCTAATTTTTCAAGTACAACAAAACAATTTAGCCTCTTTTTTCCCCCTAGAATGAATGttgtgtttgtaaaaaaaaaaaaaaagtgtagagGGCTGTCATTGAATTATGACCCCTATGACATAAGACTTGACCTTTTGGTCTTTGTCTCCCTGGTGAAAACACCACTTTGCTGGtgctgatggagggaggagactaaaagtttattttgttttcaaatgttgaaaatgtatttgtttcttTATTTTGGTGGTTGTACTTGAgtcaatagctaggtttccagCCAATTGgggacagattttcatgcgaatattcagAAATCTGCATAAAGAATGAgaattttcccaccagtggtgtttccaccaaactgacttgttggtgataaaaatcagtgcgtgatgacACGGTGCACTTTTTcacttaagttttcatgtactgaataaaaatctAAAATCCCATGTCCTTCCATCGCTGTTgccataaatagcaaatgtgcctactcttgtcttggcacgtgcgctctagccaacaactcgcagatacagtgctggtaggctagtctacatgagattattatggattaGAGCGAGAATATTTATATttgtcaagcatcgatcatcatgtcaccggAATAAGATCCtctatttattggaaaggagcatcaaactcatcaccttgcactttcattACCCTGTAAAATTCATAATTTAGCCTAATAAACGGCATGGTTTCCCAAGTCGTAGTGGGAGTtccacacaccatatcattgtGTGACTCACAATATTAtggttatatcaatatttgtgcataaaagTATTTCCACCATTTCACTTGTAATTAATTTGACACAAAGATCTCAACATGTTGAACGAACAAATTACCTGTTGGCATTTAAAACAATTTACTGAAAGTTAGTTTCTAGCAAAGCTGTCgtgatttttttttcaaatacaATATAACTTCGCATAAAAACTGGTTGGAAACGTGGTTAGTGATGACATGATGTAGCAGCACAATTTAGAGTTGGGGTTTTAGATATCTTGATTATAACTGTATATAATGTCAGCAACCATTTCTGCTTCAGAactgtcattttttaaatgtctgCAGATGCTTTTTGTGACTGAATTGACTCCATATGCCTTAGACTGGGGAGATAACCCAGTATGTTTTGGGATGGGGTAGGTGAGAGGGTGCTGATAGACCGTACACCCATATGAAATCACTAGAGAAGTGCCTAGGCCCGAGTTCCAATACCTGattatcctcctctcttctcccttcattGAAATAATCAACCCTGATATGACTGAATGGAAACCTGAAACTTGACTTTCACTTATCCAATTGGGCTGATGTTCGGTCAGTCATTACTTCTAGAAAGGGAGGAAGGAAGCAGGCCCTTTCAAGGTATTTAGACAGCTCCTATGTTTCACAGAGGACAGAAGCTTGGTCTCCTGCTGGGCACTTCAGTGAAACAATGACTGTCTCCACTGAGTGAAAACCGAAGTCTTTCATTTCAGATACCTATTTGAAACTAAAAGGGTTTGGGGGTTAATGTCAAATTCATATACCTCTTGTGATATTGCAATCAGCAGAAATTGATTTTCACAAAATATCCTTGGAGGATGTGAACTGTATACTGGCTTTCATTCCCCAACTGGATCAAGTGATTTTTACTTTGTACGTTCACCAATGTGCAAAGTCATCCAATAAGTCTGGTTTCCCCGACTCTTGAGTCCACTTCTGGACTAAAAATGCATGTTCTACATTCATTTGTCCTGGAATAGGCACAATGTGGGTCTGAGAAACTGCCCCAATATCTCTATGAATTAAGTTGCACTGAATGTAAATAAAAGTAGTCATGCAAAATCTCTTGGGATTGATTTAAACCCATACTGTGAAAATGTGGCACTTCTTTAGCTCTGTTTGGAAAGAAAAATAAAATTCACATTTTTCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU432277 lncRNA upstream 5707 23617626 ~ 23618216 (+) True G380279
TU432275 lncRNA upstream 7670 23615857 ~ 23616253 (+) True G380277
TU432256 lncRNA upstream 19191 23604518 ~ 23604732 (+) True G380258
TU431268 lncRNA upstream 37835 23566477 ~ 23586088 (+) True G379395
TU431264 lncRNA upstream 56370 23560022 ~ 23567553 (+) True G379392
TU432352 lncRNA downstream 59796 23737834 ~ 23738771 (+) False LOC118964576
TU432351 lncRNA downstream 61012 23739050 ~ 23739427 (+) False LOC118964576
TU432347 lncRNA downstream 63787 23741825 ~ 23747278 (+) True LOC118964576
TU432366 lncRNA downstream 75183 23753221 ~ 23753477 (+) True G380357
TU432372 lncRNA downstream 83983 23762021 ~ 23762408 (+) True G380363
LOC110522830 mRNA upstream 149711 23470988 ~ 23474212 (+) True LOC110522830
XM_021601299.1 mRNA upstream 201039 23421643 ~ 23422884 (+) True LOC110522829
XM_036977079.1 mRNA upstream 231942 23370966 ~ 23391981 (+) False LOC110523456
XM_036977080.1 mRNA upstream 231942 23386655 ~ 23391981 (+) True LOC110523456
XM_036977076.1 mRNA upstream 372335 23238473 ~ 23251588 (+) True wdr41
NM_001165176.2 mRNA downstream 31805 23709843 ~ 23711877 (+) True vatg1
XM_021602162.2 mRNA downstream 35042 23713080 ~ 23735468 (+) False LOC110523463
XM_021602163.2 mRNA downstream 45989 23724027 ~ 23735468 (+) True LOC110523463
XR_005051685.1 mRNA downstream 60666 23738704 ~ 23747312 (+) False LOC118964576
XM_021602173.2 mRNA downstream 160464 23838502 ~ 23842045 (+) False LOC110523468
TU430848 other upstream 616636 22942292 ~ 23007287 (+) True lhfpl2a
TU430672 other upstream 994254 22602110 ~ 22629669 (+) True G378868
TU430626 other upstream 1117653 22503752 ~ 22506270 (+) True G378832
TU430417 other upstream 1392003 22172535 ~ 22231920 (+) False G378660
TU432349 other downstream 62396 23740434 ~ 23741459 (+) True G380340
TU432379 other downstream 160486 23838524 ~ 23843711 (+) False LOC110523468
TU432380 other downstream 160486 23838524 ~ 23842716 (+) False LOC110523468
TU432381 other downstream 160486 23838524 ~ 23844345 (+) False LOC110523468
TU432383 other downstream 160486 23838524 ~ 23843846 (+) True LOC110523468

Expression Profile