RNA id: XM_021602336.2


Basic Information

Item Value
RNA id XM_021602336.2
length 2844
RNA type mRNA
GC content 0.45
exon number 6
gene id rgs7bpb
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28418222 ~ 28423947 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtgttaagatttcccttcactggaactaagttgcctagcccaaaccatgaaaaacagccccagaccattattgcttcaccaaactttacagttggcactattcattggggcgttctcctggcatctgccaaacccagatttgtcagaGGGACTGCCAGTAAAGTGTGATTCATTACTCCGgagaacgagtttccactgctccagagtccaatgatggagagctttacaccactccagccaacgattagcattgcacatggtgatcttaggcttgtgtgcagctgctcagccatTGAAACACATTTCTTGAACAGTTCTTCTGCTggagttgcttccagaggcagtttggaactgggtTGTGAGTGAACAGAACAGATTATTTTTACGCACTACAcgtttcagcactcggcggtcccgttctgtgagcttctgtggcctaccacttcacggctgtttccacttcacattaacagcacttgaccggggcagctctagctttgaagaaatttgacaaaattacttgttggaaaggtggcattgcTATGAGGTACTACATTGAAAGACACTGAGCTCTTCTgtaaggccattctgctgccgatgtttgtctatggagattttaTACATCaaatttatacacctgtcagcaacaggtgtgtgcgatatagccgaatccactgatttgaaagggtgtccacatacttttgtatatatagtgtattttagTACTGTTGCAATTTTGTGTGTTGCAGGGACTCAttgtaatattttgtcttaccAGTGTGTCATTCAGTGTATTACCAATGATAGACATCTTTTATACATTTTACAGAACAAATTGCCAAATCTCTGGTAAGTTATGTGTCAAATGTACAGTTTTCATTGGTTGGCAATTGTGGTGACAATAATACATTGGTTTGCTTGCAGCCAACAGTAGCCTGTATGTCTGTATTCTGTATCTCACATCGGTCGGGGAGGCTGTGATGTGCGTAAATTGATGAGATTTACTTTGAGCATTCATATTCCTGCTGGTCTTTGAATGTGCTGTTGCTCATACCAGATACGAATCATATTTGTAGATATTTGCGTTTATTCTCAATACTTTCCTGCGACAGACCCGCTTGCTTTGGAGTCGTCGACGCCTCAACAGTTAACGGGATGCCGGAGCAGTGACAAATGGTTGGCTCAGGCTCCCCATGAATTCGCTTCTCAGGTGAAAGCACGACAGAAGACCGTTCAGCCGCAGTTGGCCTTCTGCTGGGGTGAAGGTGACTCGTTTCGCCGCTgaggagagagatgcagagaagaaGCTGCGAGCCGTCCACTACTTGCTGTCGTCCTGCAAGCTGAACATACGAATATTATAGATAGGCTGGCCGTGGGATTTTATCAGTGACTGTGTATGCATGTGTTCTGCACCGAACGGGCGCATTAACCGCCCCAGATCCGCAGCGAACATTTTCCAGCTCGGCAAACCACCGCAGAGGGACCCCGAGCGCCGGGAGAGCACCGAGAGCGCGCGGAAAGCCCAGCGGGCCGTAGGCGACTGTAGGATGGTCATCTCTATTGGGGAGATTTCTGCCGATTGTCCCTCTTTACGGGCCGTGCTGCACCGTACCAGGACCAAAGGATGCGCTATGGCCCAAGCTGCCCATCAGAACCTCACCGTGATATCTGGGTCTGGGCCAGAGGATGGGGAGATCCACCCAGAGATCTGCCGGCTCTTCATCCAGCTGCAGTGCTGCCTGGAGATGTTCATCACGGAGATGCTCAAGTCCATGTGTCTATTGGGGGTACTGCAGCTCCACAGGAAAGGAAAGGATTCATACCCGGAGCCCAGGCTGGACTTCAAGATGGATGAGAGTTCTGATGTACCCATCCTGGAGGAGCGCTCCTCCTCACCTGTGGACTACCAACATGAGTCCTGGCTGGTGTGCACCGATATTGAAAACATAGAGAGGGACATGCGAGAGATGAGAAACCTACTCAGCAAACTCAGGGAGACCATGCCTTTACCACTAAAAAACCAAGATGACAGCAGTCTGCTGAATCTCACTCAATACCCGCTAGTCAGGCAGAGGAAGAGGCGCTTCTCTGGGTTCTGCTGCCTGGTGTCTGGCTGAGTCAGTCGGGTCCTGCAGGCAGCAGCAAGGGCAGCACACCAACCCTACACAACACCTTACATGTTATTACTGCCATTTGGGGAAGGAACTTTCTGATCAGTCTGTCTTTATTTTGTAATATGATTATATGTAGAAAAAGCTATTCAAATATAATGTTACAAACATGCATATTTTGCTATTATATTATTCAAGCTGTCTCTCTTTGTAGAAAAGGAGGACCCTTAGGTCTATAGACGAGCACAAACGGATGTGCCAAACTGATGCCATGAGAGATGCATTATGTTGGTAGACAGCTTTGCCTAATCTTTGCCTTCAGACATCTTCCTCAGAATGTCATTATATTTCTTCACTGTGCGATGCTTCTTTTGCAGTCTTCCATGAAAAGGAAATCTGTCTCCAACTTACTTTTTCCATCACAAGGGCTTTGCAATGCTCCATATCAAAAACATTTCTCATTTcatgtaaatacagtatataaatggTGGTAAATGTTTTGTATGAAACTTTCTTTGAATAATGTAACTATAGATTATCTAAAGATTGAATGTCTAAATCGTTTGCATTGATTTATTTTGATGTCTTGGCCGAAAGTGTACAGCATGAATATTGCTATTTGTACTGTGGTAGATGTGTAGTGTATAGATGTTGTGCTATAGATTGTTGTACGGCTGACAGTATGTATAGGCCATTTTATAATGTGAATAAACTTTTTGTATTTAAATAA

Function

GO:

id name namespace
GO:0009968 negative regulation of signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438281 lncRNA upstream 21478 28396537 ~ 28396746 (+) True G385868
TU438277 lncRNA upstream 29291 28388727 ~ 28388933 (+) True G385864
TU438270 lncRNA upstream 36335 28381657 ~ 28381889 (+) True G385857
TU438269 lncRNA upstream 37244 28380757 ~ 28380980 (+) True G385856
TU438261 lncRNA upstream 50330 28366757 ~ 28367894 (+) True G385848
TU438298 lncRNA downstream 356 28424303 ~ 28424517 (+) True G385884
TU438302 lncRNA downstream 573 28424520 ~ 28424894 (+) True G385886
TU438301 lncRNA downstream 6734 28430681 ~ 28432375 (+) True G385885
TU438307 lncRNA downstream 48122 28472069 ~ 28472287 (+) True G385891
TU438309 lncRNA downstream 51447 28475394 ~ 28475595 (+) True LOC110522905
XM_021602334.2 mRNA upstream 1816 28406724 ~ 28416408 (+) True rnf180
XM_036977201.1 mRNA upstream 71306 28269837 ~ 28346918 (+) False ank1b
NM_001124535.1 mRNA downstream 15131 28439078 ~ 28463945 (+) False ghr1
XM_021601256.2 mRNA downstream 19330 28443277 ~ 28463949 (+) True ghr1
XM_036976519.1 mRNA downstream 40152 28464099 ~ 28467134 (+) False LOC110523547
XM_021602337.2 mRNA downstream 40187 28464134 ~ 28467134 (+) False LOC110523547
XM_036976520.1 mRNA downstream 40188 28464135 ~ 28467134 (+) True LOC110523547
TU438217 other upstream 669 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 513493 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 711146 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 734831 27675352 ~ 27683393 (+) True LOC110522888
TU436048 other upstream 1754611 26661838 ~ 26663613 (+) True G383794
TU438959 other downstream 502330 28926277 ~ 28930931 (+) False spag8
TU439971 other downstream 1317853 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 1473039 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 1863004 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 3536408 31960355 ~ 31960745 (+) True G390184

Expression Profile