Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU438309 |
| length | 202 |
| lncRNA type | sense_over |
| GC content | 0.38 |
| exon number | 1 |
| gene id | LOC110522905 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 28473547 ~ 28475595 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| species | rainbow trout (Oncorhynchus mykiss) |
| id | name | namespace |
|---|---|---|
| GO:0006468 | protein phosphorylation | biological_process |
| GO:0005524 | ATP binding | molecular_function |
| GO:0004674 | protein serine/threonine kinase activity | molecular_function |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU438307 | lncRNA | upstream | 3107 | 28472069 ~ 28472287 (+) | True | G385891 |
| TU438301 | lncRNA | upstream | 43019 | 28430681 ~ 28432375 (+) | True | G385885 |
| TU438302 | lncRNA | upstream | 50500 | 28424520 ~ 28424894 (+) | True | G385886 |
| TU438298 | lncRNA | upstream | 50877 | 28424303 ~ 28424517 (+) | True | G385884 |
| TU438281 | lncRNA | upstream | 78648 | 28396537 ~ 28396746 (+) | True | G385868 |
| TU438349 | lncRNA | downstream | 60744 | 28536339 ~ 28539057 (+) | True | G385933 |
| TU438362 | lncRNA | downstream | 84652 | 28560247 ~ 28560612 (+) | True | G385946 |
| TU438392 | lncRNA | downstream | 182977 | 28658572 ~ 28658860 (+) | True | G385973 |
| TU438437 | lncRNA | downstream | 191865 | 28667460 ~ 28667837 (+) | True | G386018 |
| TU438436 | lncRNA | downstream | 194120 | 28669715 ~ 28670050 (+) | True | G386017 |
| XM_036976519.1 | mRNA | upstream | 8260 | 28464099 ~ 28467134 (+) | False | LOC110523547 |
| XM_021602337.2 | mRNA | upstream | 8260 | 28464134 ~ 28467134 (+) | False | LOC110523547 |
| XM_036976520.1 | mRNA | upstream | 8260 | 28464135 ~ 28467134 (+) | True | LOC110523547 |
| XM_021601256.2 | mRNA | upstream | 11445 | 28443277 ~ 28463949 (+) | True | ghr1 |
| NM_001124535.1 | mRNA | upstream | 11449 | 28439078 ~ 28463945 (+) | False | ghr1 |
| XM_021602340.2 | mRNA | downstream | 5837 | 28481432 ~ 28483385 (+) | True | LOC110523549 |
| XM_021602344.2 | mRNA | downstream | 244682 | 28720277 ~ 28733042 (+) | False | pip5k1ba |
| XM_021602345.2 | mRNA | downstream | 244682 | 28720277 ~ 28733042 (+) | True | pip5k1ba |
| XM_021602350.2 | mRNA | downstream | 261866 | 28737461 ~ 28780731 (+) | False | LOC110523554 |
| XM_036977208.1 | mRNA | downstream | 261866 | 28737461 ~ 28780731 (+) | False | LOC110523554 |
| TU438217 | other | upstream | 57839 | 28416605 ~ 28417555 (+) | True | G385805 |
| TU437511 | other | upstream | 570663 | 27904467 ~ 27904731 (+) | True | G385171 |
| TU437387 | other | upstream | 768316 | 27706714 ~ 27707078 (+) | True | G385053 |
| TU437362 | other | upstream | 792001 | 27675352 ~ 27683393 (+) | True | LOC110522888 |
| TU436048 | other | upstream | 1811781 | 26661838 ~ 26663613 (+) | True | G383794 |
| TU438959 | other | downstream | 450682 | 28926277 ~ 28930931 (+) | False | spag8 |
| TU439971 | other | downstream | 1266205 | 29741800 ~ 29746194 (+) | True | tbx5a |
| TU440079 | other | downstream | 1421391 | 29896986 ~ 29898134 (+) | True | G387516 |
| TU440680 | other | downstream | 1811356 | 30286951 ~ 30287824 (+) | True | G388019 |
| TU442960 | other | downstream | 3484760 | 31960355 ~ 31960745 (+) | True | G390184 |
