RNA id: XM_021602346.2


Basic Information

Item Value
RNA id XM_021602346.2
length 6131
RNA type mRNA
GC content 0.52
exon number 24
gene id LOC110523554
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 28737461 ~ 28780731 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACAATAGTCGTTGTCGAATTTCCTTTGTTTGAATCACAAGAAAAGTGGTCTCTGGTTTGAAAGTGCATGATGCCCGTAAATGGAGGGAGACTCTTCAGTCTTAGCAGATATGAGACACATTATTTCAAAGAAGCCAAGACTCAGCCAGCTGACCTGCCAGTGAACTAAATGACATCACACAGCAGAAAAAGCCAATTTGACTCACTGTGCCACTGGGCTTGCCTGTACCCTGTTCTCATCACTGttcaggagagacagatgtacaGTAGGAGCAAGCATATTATACACACTtggttctctctctgcctcaataCTCAATACCACTGTCCTACCACTAGGATGTAGCACCACTCTCACCGACAGCTGGTCAGGAAGGATTTGTTAGGAGTGGTTTTAAGATGCTGTACTGTGGGAGATGGAATACGTGTGTGGTAAATGTTGGTATTTTTGGTGAGCTCCTGTCCTGTAAAATGTTCCCTCGCTGATCCAGAAGCtggatacatttttcataatgCTGGCTACTTCAAATATTTGGGAATGCACTGTTGCACTGCCCAACATTCCATCTCTCTGCCTGGAGGTATACATACTACAGACCCCCAGACTCCCACGCTCTGGTCTGCTAACTAGTATCCACACTGATTCCAATTATCTTGTCTCTTTTTTTTATCATGGTGGATTTTGCAATATCCTCCATCACGTGTGTGGCTATATCCTAATTCCTCACACTCAATCACAAGTGATTTACAATGTAGTTCTACTAGTCTGTAGAATACCTGTGTGTCAATCAATATATGCTCATTCTATATTGAGTCATAGCAATAGTCAAGGGGtttattcactaggaaccaaacacaGAGGACTAGCCTGTACTTTCCCAATAGGAAACGTTAATTTTCGCTGCAAAAGGTTTTCTGTTGCACAACGTTTTGCCACAGTTTGctagtgtgcactaatgaatacaccccagtccTCCCTTACCACTCCTTATCTGTCCTGTGAGTCCAAACTTCTAAAAGTGGATTATGATCTGTCCCATCCTCTGTCAGCCAGAGTGATGCCCCCATTTCCAAAAGCCTGGGCTGGAGATGTCAGCAGCACAGGGATTCGGCTCCACTTaattttaagtaaaaaaaaaaaaaaagttattcaaACCTGCGCTCTCAGATTGGCTGTGTGTGCCCCCGTGTGTTTTTTAAAGTATGTGGTAAAAGCGTTTGTTTTTCTGTATGTGTGAGTATTTGGGTTAAATGCTTACACACACAATTGCATACtcatttgtatgtgtgtgcgaTTTAGGTCGGtgcattattttgtgtgtgtattttaatCATCAGCATGGTTGTGCGATTGTGTAAACACAGTCTGTGGATGGTGGGATTTGCGCTGAATGTAGGCCAGCAGAATCCAGCTTATGTCAAAGCTAGGCAGGCCAAAGCAGGGTGTTGCAGTTACCGCTGGTGCTGCTGTGGAAATGGAGGAGGTAGAGTCGTAGCAGCGCatcagaggaggtagaggagcagaggagaaacCATGAAGACGGTCCTTCACCAGCACAGGAAATGGATCCACACCTACAAGGCCACTCCCATCCTCAAGGGGCTTAGCCCAGTCATGGAGGAAACCATGTGGGAGCAGTATACTGTGACACTGCAGAGGGACCCCAAGATGGGTTTTGGTATTGCAGTGTCCGGGGGGCGGGACAACCCCAATGAGGAAAGCGGGGAGATGTCCATAGTAGTGTCTGACGTGCTTCAGGGAGGGCCCGCCGATGGCCTGCTATTTGAGAATGACCGGGTGGTGCAGGTGAACGCTATTCCCATGGATGGTGTGCCACACTCCTTCGCTGTACAGACCCTCAGAAAGTGTGGGAAAGTAGCCAAAATTACAGTCAAGAGGCCCAGGAAGGTTTCGGTCAACCTGCTGAAACACGGCCCTTCCCCTGACGACCGTGTCTTCAACAACAATGACTATGACCAGGACCGCCACAGTGTGTACAGTGGACGCAGTGGTCATCAAGATCGTGACCACAGCCAGGAGAGGGGAGGTTACACAGACGCTGGCTACCAGGGACAGGGCTTTGACCGGGATTACGGTCGAGATGACCGGGGCAGGAGTATGGAGAGGGACATTGATCCAGAGAGGCAGTACAGACGAGACGGCAGCAAAGGTCGGACTCTGGACCGCGAACGTAGCCCTGACCGCCGCTACAAAAGTGACCGCACTCTTGACCGTGACCACAGCCCCAATCTGCGTTACCGTAGTGATCTCACTCTTGACCGCGACCCCAGCCCTGACAGGCGTTTCCGTAGCGAACGTACTCTGGACCGGACTAACAGCCCTGACTTGCGATACAGAGCTGGTCACAGTCCTTCCCGCAGTCACGGTCGCGACCACAGCTTTGAGCGGAACCGCAAACGTGTTCCTAGTGACCGCGACCAGAAGAAGGAGCAGATGAAGAGGAGTGGGAGCAGGGAACGTTTGGACCGTTCACCCTCCCCCGTATCCATGCCAATCCCCATGTCCCGCCCTCCTTGGGAGCCGGAGCCCCTGGAGAAACCCGTTAGTGTGCTGCTACTGAAGAACAGGCCCAACGAAGAGTATGGTCTGCATCTGGGTAGTCAGCTGTTCATTAAGGAGATGACCAGCACAGGTCTGGCCTGCAGGGATGGCAACCTCCAGGAGGGAGACATCATACTGAAGATCAATGGTACGGTGACAGAGAACCTGTCTCTGAGTGATGCAGGGAAGCTGATCGAGAAGTCTCGTGGGAAGCTGCAGCTGGTGGTGCAGAGAGACAGAAGACAGGTCCTCATCAGGATTCCTCCCCTGGTAGACAGTGACTCTGAGCTCGATGATATCTCAGAGATCGGGTCGTACCGCTCCTACTCGCCACAGGATGACCGACGGGCCCCCACCTCAGACCTGTCTTCCCATTCCTCCAATGAGAGGCTCAGAGACAAACCCAGGGAGGACCCACCAAGCAGGCTGGCTAAGATGGGCGCCATGCCGACACCGTTCGCCATGCCAGCACGAGTATCGGATAGAGTTATGGAGGACACGCCCCCTCTGcaagcagagagggaggagtccCGCCCAGAAACGCCCCCAGCATCGGTAGTCAATGTTGCCCCAAAAGTCCACGCTTCCCCAAAGCTGCCGCTGAGGCCAAGCATAGAGGACCAGGACATATACGGCCCCAGCACGGGGATGGTGCGTTTCCAGAAGGGAGATAGCGTGGGGCTGAGGCTGGCGGGAGGAAACGATGTGGGAATCTTCATTGCAGGCGTTCAGGAGGACAGCCCTGCAGAACAGGAGGGCCTTCGCACCGGGGACCAGATCATGAAGGTGAATAACATGGACTTCAGGGGCATAGTGCGTGAGGATGCTGTCCTGTACTTGCTGGAGATTCCAAAGGGAGATGATGTCACCATCCTGGCTCAGAGCAAACCTGATGTCTATAAGGACATCCTGGCATCGGGTAGGGGGGACTCTTTCTTCATCAGGACCCACTTTGAGTATGAGAAAGAGGTTCCCCAGAGCCTGCCCTTCTTCCGGGGGGAGATCTTCAAGGTGACGGACACACTCTATGACGGCAAGCTTGGCAACTGGCTGGCCAGCCGCACTGACAAAGACAACCAGCTGCTGGAGAAGGGTATCATCCCCAATAAgagcagGGctgaacaaatgtcaaatgtGCAGAACGCCCAGAGAGGAACAGCCAATGACAGAGGAGACTTCTGGAGGTTGAGAGGTCAAAGAGCGGTGAAGAAGAAGGACCTCCGTAAGAGCAGAGAGGACCTGACTGCCATCTCTGTCACCACACGCTTCCCTGCCTATGAGAGGGTGGTCTTACGAGAAGCTGGCTTCAGGAGACCAGTGGTTGTGTTTGGGCCCATCGCAGACGCAGTCAATGAGAAACTGGGAAACGACCTGCCTGAAGAGTTTGTCATAGCCAAGACTGAGCCCAAGGATGCAGGCACTGAGAAGTCCTCCGGTGTGGTGAGACTCAATACCATTCGACAGATCATAGAACAGGACCGCCATGCCCTGCTGGATGTAACTCCCAAGGCGGTGGACACCCTAAATTATACCCAGTGGTACCCCATCGTGGTGTTCCTCAACCCGGACAGCAAGGGTGGCGTCAAGACCATGAGGAACCGCCTGGTGCCCGGCTCCAACCGCAGTGCCCGCAAACTCTACGAGCAGGCGGTCAAACTGAGGAAGACCTGTTCTCACCTCTTCACcgCGACCGTTGACCTGAACTCAGCCAATGATGGGTGGTACGGGAGTGTGAAGGACTCTATCCGGGCACAGCAGGAGCGGGCCGTGTGGGTCTGTGAGGGCAAGtTGGACGGCTCGGAGGAGGACCTGGATATCCATGACGACCGCATGTCATACCTGTCAGCGATGAGCGCTGACTACCTGAGCATGGACAGCCGGCTGACCAGTGACTACGACGACACGGCCGATGAGGGCGGGGCTTACACCGACAACGAGCTGGACGAGCCAATGGACGAGCCCCATCAGCCGGTGTCGGCAATCAGCCGCTCCTCAGAGCCCGTACTGACAGAGaGACCCCATCTTGCCCCCATACTGCATATGAGGAGatcagggagcagagaggggctgagagaCCCCAGTCCACCCCCCTCCTTCGTCCCTGAGCCCCCCAAGCAGGTGAGGGTGCAGTCTCGCGGGGGCTACGACTCCCACTCCAGTAGCACCATTAGCAGCGACACTGCCGGGGGGACCAAGCCAGCCCCACCTCCAGTTGCCCTCAAGCCCACCGTGGCCCTTAAGCCTACTCTGAGGGCACTCAACCAGTCATCTGAGGACCACGCTGTCCCGGAGGGAGAGGACCCGGCCAACCGCTCCTTCATCGGCAAGGTGAAGGCCTTTGAAAAGATGGACCACCTGGCCAGAGCCCAGAGGATGCTGGAGCTCCAGGAGGCTGAGCACGCACGGCTGGAAATAGCCCAGAAGCACCCAGACATCTATGCAGTCCCAGTGAAACTACCAAAGCCCAACCACAACCGCCCACAGCCAATAGGCTCCAGCTCCAACCCGGAGCCCCAGACCCCATCCTCCAGGCCACCGTACTCTGAGAGCAGGGGTCATTTCGACGATGATGAGGAAGAGTACCGCAGACAGCTGGCTGACCAGACCAGACGAGGCTACTACAGTAACCCCCAGAAATACAAAGACACTGAGCTGTAGGACAGACAGACCCACCTATCGCACCCTTTCGTTCTCACCCAATCAGCGAGGCCCTCACTGTGCTCACTCAAACAGCCTAGTGTTACGGTTGCCTATCCGAATCTTTGGCCCGACCTAGTGGCAGGAGGATATATCCCGTTCCTTGTGACCACTAACCAAGTATGTGTCCTTACCTTGACTGTTTGTTTGCCTCACTATGTGGATGGTGAATCTGCATTTTTAACCTCCCAACCTCATGTGTACCCTGATGGGTAGTGTTTGATCTTCACCCTCAACCCCTCAGTCATATCTGCCCAGACCAATGGAGTCTGAGTACCCTGTCTTTTAAAAGAAATGTAAATcttacatttgtgtatatattTATCTTTATACATGTTATACATCGCATTCTTTGTTACATTAATAGAAATGTATTTGGACGGACAGAATATTTTGTCTACTGCTGCTCTATGGTCTGCTAGTGGTGGAGAATCTAGCCTGTATCCTTTTAAATCATGCATTGTATACCCTTTTGATTTACTCTACACTTGGACATTTTGTCTCCTTAAATACTAGAGATCAGCACATACAAAGTGCCTTTAGCTCTGAAAGTGTAACAGTGTCAGATCACTGAAAGAACAAACAAGCAGTCAACACTTGGCTCTCAGAGGTGATGGGCAAAACATGCCAGTTTACTTCTGTATTAGCTGCATCCATACAACCTGAGACGATCACATTTTTAtggcatatacagtatatacgtttttgttttttttaccagtGACTCTTACTGTCTTTAACATGTCTGTTGCTTTGCTCTACATGTCTGTATTCCTCTACTATTTTTTATTCATGTTCCTCAGGCTGCTGAAATCGACTGTAGGGAGTTTTACTTTCTCAAacaaatacacaaataaataACTTAACTTTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU438477 lncRNA upstream 33489 28718802 ~ 28719022 (+) True G386057
TU438463 lncRNA upstream 46999 28705178 ~ 28705512 (+) True G386044
TU438443 lncRNA upstream 67497 28684742 ~ 28685014 (+) True G386024
TU438441 lncRNA upstream 69304 28682750 ~ 28683207 (+) True G386022
TU438436 lncRNA upstream 82461 28669715 ~ 28670050 (+) True G386017
TU438898 lncRNA downstream 72149 28852880 ~ 28853151 (+) True G386445
TU438960 lncRNA downstream 147085 28927816 ~ 28930931 (+) True spag8
TU438991 lncRNA downstream 181086 28961817 ~ 28965648 (+) True G386537
TU439028 lncRNA downstream 213414 28994145 ~ 28995123 (+) True G386568
TU439069 lncRNA downstream 290081 29070812 ~ 29073163 (+) True G386606
XM_021602344.2 mRNA upstream 19469 28720277 ~ 28733042 (+) False pip5k1ba
XM_021602345.2 mRNA upstream 19469 28720277 ~ 28733042 (+) True pip5k1ba
XM_021602340.2 mRNA upstream 269126 28481432 ~ 28483385 (+) True LOC110523549
LOC110522905 mRNA upstream 276973 28473547 ~ 28475538 (+) False LOC110522905
XM_036976520.1 mRNA upstream 285377 28464135 ~ 28467134 (+) True LOC110523547
XM_021602354.2 mRNA downstream 15717 28796448 ~ 28804711 (+) True LOC110523556
XM_021602355.2 mRNA downstream 24495 28805226 ~ 28829428 (+) True smc5
XM_021602357.2 mRNA downstream 48984 28829715 ~ 28837189 (+) True zfand5b
XM_021602358.2 mRNA downstream 95842 28876573 ~ 28880143 (+) True LOC110523559
XM_021602360.2 mRNA downstream 145532 28926263 ~ 28931410 (+) False spag8
TU438217 other upstream 334956 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 847780 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1045433 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1069118 27675352 ~ 27683393 (+) True LOC110522888
TU436048 other upstream 2088898 26661838 ~ 26663613 (+) True G383794
TU438959 other downstream 145546 28926277 ~ 28930931 (+) False spag8
TU439971 other downstream 961069 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 1116255 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 1506220 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 3179624 31960355 ~ 31960745 (+) True G390184

Expression Profile