RNA id: XM_036977250.1


Basic Information

Item Value
RNA id XM_036977250.1
length 5573
RNA type mRNA
GC content 0.49
exon number 24
gene id LOC110524742
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 30133672 ~ 30217715 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGTGTGTCAACATAGCCTATTTAGAAATAGCTGCATTGCTTACATAGCCTGTATTTTCTATTTCGTACAGCATAGCCTAGTACAAGAGAGAGCACACGAAGCCTAGGGGTGCAATTCTGTTGAGCTAGATCTCCGTGGTGCATGCGCGTCGGTGCAGGGATGTCAGCGTATTCTGAGAAGAGATCATCCCTCGGTGCTACGTGGTAGAGAGCTGAACATAGCTGTataagagagtggggagaggagaaGCGTTCTGTGTAGAGGGAACACCGGGGAATCGTAATCAATGAGGGTGCAAGCAAAATTAAAATAGAAGGCGTATTCCAAACGTTGAAACACCTTTCACGGAAGGGTGATAAGGGCCAAGGACCGAGAGAAACGTTTTCCCTCATTTAATTATAATCTGTAAAGGAGCGACATATTCCCTTGCAATCATGGGGAACCGGGGGATGGAAGACCTTATTCCTCTGGTGAATAAAATGCAAGATGCCTTTTCGGCCATCGGTCAAAATTCTCAGTTGGACCTGCCTCAAATTGCTGTGGTTGGCGGGCAGAGTGCAGGGAAAAGCTCGGTGTTGGAGAACTTCGTTGGGAAGGATTTCCTTCCTCGTGGCTCTGGCATCGTCACCCGTCGTCCCCTGGTCCTGCAGCTGATCAACTGTCCCACAGAATATGCTGAGTTCCTCCACTGTAAGGGGAAGAAGTTCACAGACTTCGATGAGGTTCGGGGGGAGATCGAGGCGGAGACGGACCGCATCACTGGGCAGAATAAGGGCATCTCCCCTGTGCCAATCAACCTCAGGGTCTACTCCCCACATGtcCTGAACCTGACTCTGGTGGACTTGCCGGGGATGACCAAGGTCCCAGTAGGGGACCAGCCTGCGGACATTGAGCAGCAGATCAGAGACATGTTGTATCAGTTTGTGACGAAGGACAACTGTCTGCTGCTGGCTGTTTCCCCGGCCAACTCTGATCTGGCCAACTCAGATGCCCTTAAGATTGCTAAAGAAGTTGACCCACAAGGTCAGAGGACCATTGGTGTGATCACCAAGCTGGATCTGATGGACGAGGGGACTGATGCCCGAGAAATTCTGGAGAACAAGCTGCTGCCACTGCGAAGaggTTACATCGGTGTGGTGAACAGGAGTCAGAAGGACATTGATGGGAAGAAGGATATTACAGCGGCCATGGCTGCAGAGAGAAAGTTCTTCCTGACCCACCCTGGATACAGACACCTGGCTGAACGCATGGGCACCCCCTACCTACAGAAAACACTCAACCAGCAACTGACCAATCACATCCGGGACACTCTGCCGGGGCTGCGGGCCAAGCTGCAGAGCCAGCTGCTGTCTATAGAGAAGGAAGTGGAGGAGTACAAGAACTTCAGACCTGATGACCCCTCCCGCAAGACCAAGGCCCTGTTGCAGATGGTGCAGCAGTTCTCAGTGGACTTTGAGAAGCGTATCGAGGGCTCTGGGGACCAGATCGACACAGCAGAGTTGTCAGGAGGAGCCAGGATCAACCGCATCTTCCACGAGCGCTTCCCCTTTGAGCTGGTCAAGATGGAGTTTAACGAGAAGGAGCTTCGCAAGGAGATCAGCTACGCAATCAAGAACATCCACGGCATCAGAACTGGCCTCTTCACTCCGGACATGGCTTTTGAGACCATTGTGAAAAGGCAGATCGGCAAGATCAAAGAGCCCTGCCAGAAATGTGTGGACATGGTCATTTCTGAGCTAGTCAATACCGTTAGGCAGTGTACTCAGAAGCTGGCTCAGTACCCCAtgctgagggaggagatggagaagattGTCACCCAGCATATCCGAGACCGCGAGAGCCGCACCAAGGaccagGTGATGCTGCTGATTGACATTGAGCTGGCCTACATGAACACCAACCATGAGGACTTCATTGGCTTTGCAAATGCCCAGCAGAGGAGCAGCCAGGTGGCTCAGAAGAAGCAAACTGGCAGTAAGCAGGATGAGATTAtgccggagagaggagcagttAATGATCGGTTTAAGgtgatcAGGAAGGGCTGGCTGACCATCAACAACATTGGCATCATGAAGGGAGGAGCAAAGGAGTACTGGTTCGTCCTGACCGCTGAGTCCCTGTCCTGGTACAAGGACGATGAGgagaaagagaagaagtacATGCTCCAGGTGGACAACCTGAGGCTGAGGGATGTGGAGAAGAGCTTCATGTCCAGCAAGCAGATCTTTGCCCTGTTCAACACAGAGCAAAGAAATGTATATAAGGACTACCGTCAGCTGGAGTTGGCCTGCGAGAGTCAGGAGGAGATAGATGGGTGGAAGGCCTCTTTCCTTAGAGCTGGAGTGTATCCTGAACGTGTCACGGAGAAGGAGGGCAAGCAGAGTGACAGTGGAGACGGAGAGAATGGCTCAGATAACCTCATGCACTCCATGGACCCCCAGCTGGAGAGGCAGGTGGAGACCATCCGCAACCTGGTGGACTCCTACATGGCCATCGTCAACAAGACCATCAGGGACCTCATGCCCAAGACCATCATGTACCTCATGATCAACAATACCAAGGAGTTCATCAACGCGGAGCTGCTGGCCAACCTGTACCACTCTGGGGACCAAAACAGCCTGATGGAGGAGTCCCAGGAGCAGGCCCATCACCGCGATGAGATGCTCCGCATGTACCATGCCCTGAAAGAGGCCCTAAACATCATCGGAGACATcagcaccaccaccatcactaccgcCATGCCGCCACCTGTAGACGACTCCTGGCTGAGGCCGGGTGGAAACAACTCCGGGGGCAGGTCTCCAGCTGCCAGTCCCACTCCAAACAGAAGGGCTCCCCCAGGTCCTCCTGGTCGCCCTGTCTCCCGTGGCTCAGCCCCTGGCCTCCCTCCTGGTCCCCCTGTCCCCTCTCGCCCAGGGGCCTCCCCGGATCCTTTTGGTGGGCCACCACCATCAGTCCCCTCCAGGCCTAACCGTGCACCCCCCGGTGTGCCCAGAATCACTATCAGTGACCAATGAGGACTAACGCTTCTGCCGAAGACCCCCTCCCTCACCAACCCACTAAACTACTGAAGCCCCCCTCCCTTCCAACCCACCGCCTACCCCATGGCAGAGAGACCAAGGACTGCAGAGCAACCTACCTACCTAGACCTGACCTAGACCCTTCTTCCTTCTCTAATAAATGACACGgtcacgtcacacacacacgtataaacccacaccatacacacataAAAAGCACTGTATACCCCCAATACACAGAAAGGCATTCACCCTCCACTGCATATAAAGGTCAATTGTTGATTAGCATTACAATACATGTACACCTGTAAGTAGTCACACACATAAATGGGCAGGGATATGCAGCAAATATGGATGAGATAGTTAAGAATGCTGTGCTGAAATATTTGTCGTTTCTCACCCTCCCCTTCATATGGGTATTTCTCTTCCTCTCATATCTGAATGATTTCTTCTCTGATCATATTGGATTTGATAATGATATTTGTGTGCTGTGTTGATTCTTTATTCTATGTGTTGATTCTCTCTCGGGAGTAGATGCATTATCCATCTATCTAGCAAGGGGGAGCGGATCAGAAGGGATAACTGCATCTGAACAACAGAGTTATTTTTCTTGTCTTCTGCAATGATCGTCATGATCCATACTGGTCCCTAACGTCACAGGCTAGGACACACCTGACATCGATGGGAAAGTAGGAAAAACACCTAGAGAAAATGTACATTTCATTACAAATACTGACTGTAATGTGTCAAGAGTGTAATGTGGTATCAATGTCACTGCACTTAGATTGTGTATTCTATTTATTATGATACATTGATTAATGTGACCTTTTATATCTAATATCACAACAGTGACTCCTAGCCTCTGAGTTTGGGGAAATGTTCTCTCATTAGGTTTCATTCACTTGTTCATCCTTTGCTTAATCTGGCTTCATCATGTCCTCTTTTTCTATTTTCTTCCGCCTCTTTTCAATGAACAGCCGGCCATGCAAGGGTTGGCCCCCTGCCTCCTTCTGACAACTAGAAGTCCCCCTTTTTTGCCCCTCAGGGCCCTGACATCCccttcctccacccccccccccccccccccccccccccccccccactcagccCCTACACGGTGGAGGGTGAATCACCACTgtcctacacacaaacacacgaatCAGAAACCTCAGCAACTCTCCAAAACAGCCTCCCTCTAAGcaggagacggggagagagagaaagagagagaagaagaaatcgCCAACCCCTGTATTTCCCTGTGTCTATGTGCTACGCCCTTCTGTGGCCACTAGGCCTTGTGTCACTGTGAAGGCCCACTCTTATGTGTTGTGCTAACCATGATCTAACCATGATGATGTATTGTATTACTGTATCTGCATGCAATGACACAAGTTCAGGTGCTCAGACTGTGATCTGGTGTATATCGGTGTAAACTCGTCCACAACCAGCTCCCCTAGGCATATGCTGCTTTCTGTGCTTCAACCTCTGTACCGATGCCACGGGTGCTGGGTAACTCAAAGGTCTCCCGCTAAAAACTGTGGCCTAACATTGAGCTAGAGtcgtccgtctctctcctcctctcccacttgtCAATGAACCACTTCCCCACTAGTGAAAACCAGTAGCATAGCGAGGCGGGATCTAAATTGAAAGTGCAATATGTTCTTATTGGACAGCTTAATGAGAGCTGTCCACCAATCACACCAGACTCAGAGTAGATGCTCAGCCTGAGAGGAGGCGAGGAGACAGACAAGACCCAAAGGGTGCGTCTCAATACTGTTTAATTGCATAATTTCTCCTTTCCTCAGAAGGAAAGTGGAAAAATGTAAGTTGTGTTCAAGAATTATATTTTAAAGTGTTGACCCTGCCCATGATTAGGTTTGACTCTCAAAGCATTTCCAAGACCACTGGCAGGAGAACCTCTGAGAAATGTGTTGAATATCATTGGAACTGTGTAATGAGTTGGGGGATGGGGTGGCACTTTCAATTTTGGCATGATTTATCAGcttttttctttccttttttctttctttcctttctcAGTGGTCACGGGGGTGAGTGAGGACATCAGGTTTAAACCACTAACAACCCAATCAGTGATGGTCTATGCATAGAACCCTAAACAAACACACGCCTGTACAGTACACCTCTCCCCTCCCATGTTACTCATGCGTTCCCATTGCTGTGTGAGAGATGTGAGTGGACTCTGTGGTTTGTTGTATTATGACCCTGTTGGTGATAAAAGTACATGTTGGGCATGACAATGGTAAAAACTACACTCATTAGCATACCCACAAACCCATTATAGTATCTATATTGTACTCAGTTCATACAAACCCTCCCCAATACATAACTAAAATAGTTTCATTATTATTTAAGAGTAAATAGGACATATCTTACGTGTGTATATTGTGTGGTGCATCTTCTGGAAATTGTGCTTCCACTTGTCTACAGGTTAGTTGACAATGTATGAATACTGAATATTAAATTAGTATGAATAAGTGACTGAGTATGTGTACAATGAAACAAACTAAAAACAAACTTGATAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440235 lncRNA upstream 10180 30122695 ~ 30123495 (+) True G387657
TU440218 lncRNA upstream 21233 30105323 ~ 30112442 (+) True LOC110524747
TU440167 lncRNA upstream 55747 30032701 ~ 30077928 (+) True G387597
TU440125 lncRNA upstream 130163 29996478 ~ 30003512 (+) True G387556
TU440140 lncRNA upstream 156973 29975379 ~ 29976702 (+) True G387570
TU440292 lncRNA downstream 43197 30260912 ~ 30261118 (+) True G387711
TU440293 lncRNA downstream 43422 30261137 ~ 30261674 (+) True G387712
TU440674 lncRNA downstream 66112 30283827 ~ 30284092 (+) True G388013
TU440678 lncRNA downstream 67870 30285585 ~ 30285784 (+) True G388017
TU440717 lncRNA downstream 204540 30422255 ~ 30495956 (+) True rgs3a
XR_005051713.1 mRNA upstream 25126 30105293 ~ 30108549 (+) False LOC110524747
XM_036977244.1 mRNA upstream 230752 29859609 ~ 29902923 (+) True LOC110523590
XM_021602422.2 mRNA upstream 370236 29741863 ~ 29763439 (+) False tbx5a
XM_036977238.1 mRNA upstream 410987 29712933 ~ 29722688 (+) False LOC110523583
XM_021602455.2 mRNA downstream 38658 30256373 ~ 30260305 (+) True LOC110523600
XM_036977265.1 mRNA downstream 122091 30339806 ~ 30495960 (+) False rgs3a
XM_021602436.2 mRNA downstream 134463 30352178 ~ 30495960 (+) False rgs3a
XM_021602440.2 mRNA downstream 200368 30418083 ~ 30495960 (+) False rgs3a
XM_021602441.2 mRNA downstream 206230 30423945 ~ 30495960 (+) False rgs3a
TU440079 other upstream 235541 29896986 ~ 29898134 (+) True G387516
TU439971 other upstream 387481 29741800 ~ 29746194 (+) True tbx5a
TU438959 other upstream 1202744 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 1716120 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 2228944 27904467 ~ 27904731 (+) True G385171
TU440680 other downstream 69236 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 1742640 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 2002466 32220181 ~ 32220533 (+) True G390393
TU444420 other downstream 2941111 33158826 ~ 33162980 (+) True G391513
TU444741 other downstream 3143242 33360957 ~ 33361341 (+) True G391805

Expression Profile