RNA id: XM_021602436.2


Basic Information

Item Value
RNA id XM_021602436.2
length 3826
RNA type mRNA
GC content 0.49
exon number 11
gene id rgs3a
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 30339806 ~ 30495960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ACTGTGAGGATCTCTGTAGAGACTGGAGCGACTGTAGCTACACGAGAGCCGCCAGCTGCACAGCCTGTATTGTTCCCTTTGGTGGGCAGAGAGCATGGAGCTAGGAGCTAAAATGGAGATGCCTCTGGACCTGTGTAACCCCACACGGACACTGGTGGTCTCTGAGGAGATGATCCTCCATGAGAGCAAGCACCTCTCCATTAAGgtgactTTGTTCATCTATACAGACCTGATGTTGGTGACCAGAGAGGATGAACCAGGGAGATGTAACGTCCTACAGAACCCTCTATTTCTCAGACAACTACGGCTACAGGACGATCATGCTGAAGATCTGAGGATCTATCTCATCCACATGACTGAGaagtGTGACTGCCTGCTCAGTCTGGAAGCCTACTCTGCTGACCAGAAGCGgcgtgtgtgtcagtgtctgAAGGACACGATTGACAAGCAGCTCCAGAGGACTGCCCCCTTCTACCCTCCTAAAGTCCAGatGCTGGAGCCCAAGGTGGATACTCCTCCATGTGAGTTGGGAGGAGGACAAGGCCTACCCCTGCCAGGGTCTGAAGAGGAccacctctacccctacccctcCAGCCCCTCAGAGCCCCTGACCCTGGGCAACCCGTACCCCTCTGAGCTTCTCACCCCCCTGGAGGAGGTTTGCACCCCACTGGGCGACGGAGAGGAGCACAAGGTGCCACCCACCCCACCGCCCTCCACCGAGTGGGAGGACAGCAAGAGCATGGAGGGCACTGAGCCTGAGATCTGgcgggaaagagaggaggaggtggaggaggtggaggagggggaggaggagaggaagggtgaggaggaagcagagatagaggagggaggggaaagagagagggaggaggaggaggagggaggagatgtgAAACCCCCGGGGACAGATGACGAAGCCCCGTCAGACCCCCCCGACACCAACGCCCacccctcctcttcatcctccttcgTCATCCCCGAGCTCCGCCTAGACCGCTCCTTCAGCGCCGATGCCCTCTCCTCGCCCAACACCGACGAAGAGTATGACGAGGACGATGATgaagatgacgatgatgatgaggaAGATGACAGCGATGATACCTACCTAGAGCGCAGCGACAGTAAGCGTCGTAGCATGGTGGAGGGCTCTGCCTGCGAGAAGCACGGCGGCAGGTTGAGTGTCCAGAACTCCCTGCGGCGCCGCACGCACAGCGAGGGCAGTCTGCTACAGGACCCACGCGCCACTGGCTTCACCTCAGACAATGCCATCAACTGCCTGGACCCGACACACGCCCACAAGGGGGGCTGGACGCTGCCCTCGCCTAAGACCCTGAAGAAGGAGCTGACCAAGAACGGAGGCTCCATGCACCAGCTCTGCATGCTCTTCTCTGGCAGGAAGCTCAGCGCCGGATCCCCATGCAGCTGTGACGTTGGCCCCGAAGGGTCCAAGAAGTCAAAGAAATCCAAGAACCTGGCCAAAGACATGAAGAACCGGCTTGCTTTCCTGAGGAGGAGGAATGAGTCTCCCGGAAGCAACCCAGCTGGAAAATTCGACAAGTCCTTGAAGTCAGTAAAGCCCACCCCGGAGGAGGCACTCAAATGGGGGGAATCTCTGGACAAGCTGCTGGCCCATAAATATGGCCTGGCAGCGTTCAGAGCTTTCCTGCGCACAGAGTTCAGCGAAGAGAATCTGGAATTCTGGCTAGCATGCGAGGATTACAAAAAGATTAAGTCGCAATCCAAGATGGCGTCCAAAGCCAAGAAAGTATTTGCTGAATACATCGCCATCCAGTCTTGTAAAGAGGTGAACTTGGACTCGTACACCCGAGAGCACACCAAGGACAACCTTCAGAATGTGACGCGTTCCTGCTTCGACCTGGCCCAGCGCAGGATATATGGCCTGATGGAGAAGGACTCATACCCCCGCTTCCTCCGCTCAGAACTCTACATGGACTTAGTCAACCAGAAGAAGGCCAGCACCACGTCCACCTCCTCATCGTCGTAAACACACAGAGAtcgagagagaaagtgagagacaacAACGAAAGAGAGAAAACATTGACTTGAAAGCAGGGGGGGTTGATTTTTTCATACGTTcgctgttttgttttgtttctgcCATCTTCCTGTCCCACTATAATTtgggtgtgagagagacagaaagctaGGCTGTGGCATTGAGGGGGATGTTGTTTACACAATGACCATGATGACGGACCGATggtggatggatgaagggatggagaggagagccCAGTCAGGACAGCTGGTCAAGTCGTGACTGCTGGACGCTTCTCTGATCACTCTCATTAATAATTGATCACTGTCTGTGGTTCATAACGATATACGTTGGTTTGTCCGGACGTACTGTAGAAAGGATGGGGTGCTGAAACCTCCGCAGACATGAAGACAGTCCGGTACTGTTTTGGCGCTTTTGTTGatattttccttcttttttttttacaccccccatcctcctcctcctttagaGCCAGTTCAAATGCTGTTGGTACGACGCAAAGGTTTGTTTTGTCCTAGATTCTCAATGTCTCACAATGACCATTTCTAAACGGGCTTGCGAGAAAAAGGAGAAACGTGATAGCTGGATCAATGTCTGGATGACTGGACGAAAAGCCGCTTTTTGTCTGGTTTTGCATCTTTTTTTCTGTTCACGGTGAAACACAACTCTCTCAAGCACAGTCAGCATCTGTTCTGTTCAGCATTCCCTCACAGGGTCTCACCTTGTCGCGTTCATCCAAATCATACAGCAAAAGACACTGAGAaacagagggaaaagagagagagaaagatggaaaaATATCAACAACGGAACGGACCAAAACTGCAAAAGCAGAGATGTGCCACTCTAACTCAGACTTGCTGCCTGTTTCCAAAGACCGTCGAAAAAAGAGAAGTAACACTTGACTGTGTTCTGATAAGCAATTCATTGTAGCGCCACCTAGACTCAACGAGGCAGCATTCTCAGGACATTAAGGCACTTAAGCTTCCAAGCTTGATTTTTATTGTTATTCATTTTTGTTTTTACacataaaatgttgttttttttaaatcgttTTAAGTTCAAACCTGCACTCCATAAGTATACTGAGCAATACTGTTGGGAGGTTGCTCTTTTCATAAAACAAACGCTTCACCTGTACAAAGGTCTGCCTATTTATTTAGATATCTTGCTGGATGCTTCACCCATTGCACTCAGATGAAAGCTCTCCCTTCCCCTAACCACAAACCAGGTCCACCGCTGTCCTGGCTTTAAGTGcaatatgtttttgtttattttcctttttttccATTTTTATCCGAAAGACAATGTCTTGAGCTCTGTATTATACACTTTATTTGTAAGAGTTGTGCTGCAAAATTCTGCTATAAAGTTGATTTACAGTTTAAGTAATTAATCAAGAATAGATACATGAATTAAGTAAGTCATTCTAACTGTGTACCCTGGCAGCAGGCAGCTAGGGGTTAAGGATGTACATATAATTCTTTaagaaaataaagtaaaaaacagaaaaaaacaagAGGTTTCACTTGTGTTGAGCTGGAACCTGGCTGTATCTATGTAAATATGAGAGACTCAAAGCTATAAGATGACATGTATTGTTATAGAAATGAGGACGGGTGGCTACAGTCTGCCCTTTCCTGGTCATACACTGCTTGTCAGGAGTTTTCTGAAATGTATTTGATCATTTTCATTGTTTACAATTCAAACGCATCTCCCAAGATAGCAAGCGAAAAAGACAATAGAAATACATTTGGTGTTGttgctgaaaataaataaaataaccaaCTGGTGAAATGATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU440678 lncRNA upstream 66394 30285585 ~ 30285784 (+) True G388017
TU440674 lncRNA upstream 68086 30283827 ~ 30284092 (+) True G388013
TU440293 lncRNA upstream 90504 30261137 ~ 30261674 (+) True G387712
TU440292 lncRNA upstream 91060 30260912 ~ 30261118 (+) True G387711
TU440259 lncRNA upstream 182219 30169350 ~ 30169959 (+) True G387678
TU441153 lncRNA downstream 116279 30612239 ~ 30612506 (+) True G388448
TU441177 lncRNA downstream 131686 30627646 ~ 30628015 (+) True G388472
TU441182 lncRNA downstream 133392 30629352 ~ 30629649 (+) True G388477
TU441184 lncRNA downstream 134402 30630362 ~ 30635355 (+) True G388479
TU441188 lncRNA downstream 139757 30635717 ~ 30635954 (+) True G388483
XM_021602455.2 mRNA upstream 91873 30256373 ~ 30260305 (+) True LOC110523600
XM_036977255.1 mRNA upstream 134463 30133677 ~ 30217715 (+) False LOC110524742
XM_021602450.2 mRNA downstream 178976 30674936 ~ 30711660 (+) False LOC110523597
XM_021602451.2 mRNA downstream 178976 30674936 ~ 30711660 (+) False LOC110523597
XM_021602452.2 mRNA downstream 178976 30674936 ~ 30711660 (+) False LOC110523597
XM_021602453.2 mRNA downstream 178976 30674936 ~ 30711660 (+) False LOC110523597
XM_021602448.2 mRNA downstream 178978 30674938 ~ 30711660 (+) False LOC110523597
TU440680 other upstream 64354 30286951 ~ 30287824 (+) True G388019
TU440079 other upstream 454044 29896986 ~ 29898134 (+) True G387516
TU439971 other upstream 605984 29741800 ~ 29746194 (+) True tbx5a
TU438959 other upstream 1421247 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 1934623 28416605 ~ 28417555 (+) True G385805
TU442960 other downstream 1464395 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 1724221 32220181 ~ 32220533 (+) True G390393
TU444420 other downstream 2662866 33158826 ~ 33162980 (+) True G391513
TU444741 other downstream 2864997 33360957 ~ 33361341 (+) True G391805
TU445804 other downstream 3651514 34147474 ~ 34148701 (+) False G392776

Expression Profile