RNA id: XM_021602453.2


Basic Information

Item Value
RNA id XM_021602453.2
length 6980
RNA type mRNA
GC content 0.48
exon number 13
gene id LOC110523597
representative False

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 30674936 ~ 30711660 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCTAGTCTCTAATTCCCTGCGCAACTTTACGGTCGTTCGACCTTTTTTCGCTCTGCCCAGAATCATTTTGATATAACTAGCAGGCGTAGCAATTTCGGAATCTGTCCTTGTATGATGGCGGACGACGAAAATTTCCACTGGAGAAACCGCAACGCATAGCCTACCCTGAATACTGGAAAAGCTGAGCCTGGGCGGACTAGCCTGCACCTTCGTCAACACAATCATACACTCGAGTTCATGCCGGAAGATGTGAAGGTTACAATATCGAAAATAAAGCAGTTTTAGTTTAGATAATTTGAGAATTAATAACTAATTTTTATTTCAAAGCGCTAGTTGTGCAGTCACCTTTGGTGTCCGAGGAGGATTTTGGAGCTCGAGCTATCCTACTCGCATGTGCTGCATCATTTTGGGAGGTCACACTGGCTTGCGGGAGACCGAAGACTGAGCAGGACAGGGCTATTTGCACCTTCAGACACTGATCACCAAGAGtcccaggagcgCTGGCCCTGAGCAGTCAGTCATGAGTGCTCAGGAGGTGCCCACCAATCCTGGACAGGAGCAGGTTGACGCGGGGGGTGGAGTCCCAGATGGCCCctctcctaccaccaccaccacccttgcTGTCCCGGTCACAATAAAGAAGGAGCCTGACATGCAGGGAGCCAGTAATGGGAAAGATGTGCCAGCCGAGATCTGTGTGGTcctcggaggaggaggaggaggaggagcagcagcagcagcaggaggaggaaggtCGCGCAATGACCAGACCCAGgGCTCCTACGTTTGCGGGATTTGTGGGAAGAAATACAAGTACTACAACTGCTTTCAAACACATGTCCGTGCACACAGAGagTCCGACAGCATGCCAGGAGAGGGGGCACCAACAACTCCCAACAAAACGGGAAGCTACGAGTGTGAGTTCTGTGGGAAGCAGTATAAGTACTTCAACCCATACCAGGAGCATGTGGCTCTTCACCAACCAATGAATTTCTCCTTTGATAATATGAAGTCGCCTCGATCACGTGGAagtgtggatggaaacatggaCGTTAGCAAATACAGTGCCACTAAATTAGAAACAGACAGTCCCTTTAGTCGGAAAATGGAAAGCAAGACCCAGTCCAGCCTGGTGGACACCAACAGTTCACAGAACTCAAGCGGTACTCCAAACCCCCTGGTGGCCGGTTCGTTCCCTGCATCACAGATCACAAAGTGCTTCACAACAATCCGGGCCTACAGTCCCCAAAACCCCAAAGACAAGGCGACAGTGGCAGAGACCAAGTCTCTAGAACCCTACACATGTGGCGCCTGTGGCATCCCGTTCCAGTTCTACAACAACCTGCTGGAGCACATGCAGTCCCACGCTGCGGATAATGAGAACCACACCAAAGGGGGGTCTCCAAAGACATCACCAGGCCCAGCCTCACAGGACCAACTGTGGAGGTCCCCCCAGCCCCAGCATCAGGCCCAAGCTCAAATAGTTCAAGTCCAGATACAGGCTCAGCCCCAGCCAACACAGAGAAACCACTACACCAACCAGAACAGTGGTGGACTACCGGAGAAGGAAAGGCAGCAGGTGGCTGAGCGTCTCCTCAGGGTGATGTGTACAGACCTGGGCGTGCTCAACATGCTCAACAGCAAGGACTTCCTGAAGCTGGCCCAGACTCTAGTGGACACGGGCGCCCGCCACGGTGCCTACTCCACCCGCGAAGCCCTGGGCAACATGAGCTCACTGGCCCTGCGCCAGCTTCCCCGCATGTACAACCAGATCAAGGTGAAGGTGACCTGCGCCCTGGGCTCCAACACCTCACTGGGCATCGCCGTCACCTGCCACTCCCAGGCAGTGGGGCCTGACGCCTGCCTAGTGCTGACAGCCTACCAGGTGGAGGGATCCAGGCTCAAACGCTATGTTCTAGGTGTCAAGGAGGCAGACCTGAGGGAGGGACCTGAGCAGGTACACCAGTGGACCCAGAACGTGCTGTCGGAGTTCGTCATGTCGGACATCCGCACGGTGTACGTGACTGAGCCGAGGGTGTCTGCGGTGGGGGTGGGGGGCTCGCCGCTGGGTGGAGCCGGGCGGGGGAGGGTGTGTCTGCGATGCGCCGGGTGCTCGCTGGGTGTAGTGGTCCAGGCGGTGCTTGGGAAGCGCAGCCTGCAGGCGCGGGGGCTCCAAGAATTGACTGAGCTGCTGGCTACCTGCCGTGACATTGCTGCCTCCACCAGCCTCTCGTTACGTGACGACTCCACCAGTGCCACCATCGACGAGGGCACGTCTAACCCCTCCGCTCCCCCCAGGCCTAGCCCCACCCCTCCCTGCTGGGACCGCACGGCTGAGGCCCTGCTTCAGGTGCATGCCCACTTTGAGCAGATATGTGAGGCATACGGGAGGAGCAAGGCCACAGCTTCTACGCTGCAGGGCCTCAACAAACACTTGCTGGGGACCCTGGCCTGCCTGCTGGCCCCTCTACGCCTTGCCGCCCTGGAGCTCAGCAGTCAGAGGAGGCCCACCCTGCAGCAGGTGCTACCTGTCTACCTGCGACTGGAGAAACTGTTCACTTCCAAGGCTGGGGAGGTGGGGACTGCCAGCAAGCTCTGCCACTACTTCCTGGAAGCCCTGAAGGAGAACTTTAAGGTGGAGAAAGCCCACCAGGTAGCCATGGTCCTGGATCCTCAGCTGAAGCTGCGTCCCGTCCCAGCCTACCAGCATGAGGAGATCATCGCCCGCGCCTGCGAGATGGCCACAGACCCCCACGATGGGGGGCAAGCCACCGGTGGGGGGTCCGGAGGTGAGGATGTGGATGGACCCTCAACAACAAAACGGCTTAGAGTGAACGTCCCCGGGGGTGGAGTGAACACCAGAGGGGTAGTAGCTGTGTCATCGGAGGCATCGTCAGATGAAAGCCAGACCCAGGTGAGACAGGAGGTTTTCCAGTATCTGGCTGAACCGCTCCTTCAGGGCACCACCCCAGACCTCTTCCACTACTGGAGCACCGCGGTGGGTGACCGCTTCCCCAGACTGGCACGCCTAGCACTGTGGCTGCTGGCCGTGCCCGCCGTGGGCATCCGCAGcgagtgtgtgagcgtgtgtgagcaGAGCCTGGCCATGAAGAGGAGACAGCAGGTCACCACTGAGGAGATGAGCAAACTCATTTTCCTGCGCTCCAACATGGCCTGAACGTTAGCCTGACCACCAACGCTGACCTAACCATGACCTCTCCACCAATGACTACAGACCATCTACATAGGGATATGGGAACCCTGAGGGGCCATACTCGTAAACTTTCGCTTAGGCCCAAGGTTTATACCTGTTGTCTAAAATGGCTAGCTGCTAGTGTTTCTCATAGGCCAACCTGGCACAATTAGCTATGATGCTGAGGACAACCAGCTGAGCACATCATTAAATTATGTAAAAGTTTCTGTATCGGCCAATTCAAATCATTGACATAGTTGGATGTGATCCAGCACATTTTCACGAAAGCGTCCTTGCCAGAAGTCCACAGGCAAGTTAGTAACTAGCTAGTTCACAGTGTAGAGCGTCTGGTTCCTGGACAATTGTCACAACTTGCGGCGTAGGTTCGAATCCCCCATGGGATGTTTCATTTTATCAAACACCTGGACTGGTTGGATACTGTTCAAGAAGGTAAGGAATAGGGGGATCTTCTCAAGATGCTGATCTGGTTAGTGCCAAATGCAACAACCAAGAATTATCAGCAGTTGAATGGCTTAAAATTCCTAGGATAAATGTCAAGGATGTTAAGGGTGTTGCATATGGTGCTAGCTAGTAACCTCTATTATTCGTTGAGCCTTAAAGAACACTGTCTTTCGCTGAATCACTTCTAGCCTAGTCTCGTCCACCAGCCGGCTCTGCTTCTGTCAAGCAGTATGGTTTCACAGCGCCTCAGAATGAGACTTGATTGGAAGTCTATGGTAGGAGCAGATGAAACAAGCACTGGTTTTAATTGACTGGTCTCTTTCCATCACCATCTAACCATTAGTTAGATCCtcttccctacatagtggactTCAAAGCATGAGCAGCGCAACTAATTTAAACAAGGAATTAAGTTCAGAAAATCTGAAAGTATGCATCTTATAAATGGTTTTCACATATCAAAGTCATATGCCCGAACTCCCGACTCGACTGGGTTTCCCAAAAGTAATATGGTCAATGTGATAACATAATACAGCTGTAGCGGCTCTCTACATTGACATATAATTAttttagcagacattcttatccaCAGCGACTTACAGTACTGGGTGTATACATTTTGTGTACTTTTTTTTTCATACTGGTCACCCGTGGGACTCGAACCCCCagtcctggcattgcaagtgccatgctctgcCAACCAAGCTACATGGGATCACAGGACCGCTCTCTCCTcgattttaaccacacacttttCAAGTCCCACTTTATTGCACTGTGTTACCAGGCGAGGTTACTTCTGACCTTAGACGTCATAGTCAACATCATGCCTTCACATTATCAAATTGCCTTCTTTTCATCCATGGCTTAAAGTTGTCTGACTTTAGTAACTACTTGAAGGACTAAGCTAGGTATACATTAGACAACGATACAAATCTTTACGTCGTTGGCCCACTTACATTATGCAAATTGTCTGCATAATCTCTAGTAGTCACCCTGATGTCTGCGACAGGTGTGCTCACATTACACCAGTTTGCTCACATTGCGACATGTCTAGACCCCTCCCTGTCCTATTTCCAGATGTGTCATGGCCACCTCCTACTGTGTGGCTGTAGCTGAGCAACGGAGGACAAGTTGCAAGTCACCTTGTAGCACCCCCCTCACTACGCAAGATACGACAGAACATTGTGTGCAGAAAAATAATCGGGACCTAGAATGTGGATCGGGACTGTGCAAAACCCATAATCGCACTTATTTCACCCAATCACATTATGTGACCTGGTTGGAGCTTACAACATCACGATTTACCTGCGATTGTAGTGGATCCCAAATTGTGGCAAAATCTCAGTTTATAATCGTATGGTCAGCTTAAGGCGAGCATGACCTCCGGTGGTTGTGTATGGCCTGGCTTCAGATTCGTTTTGGACAATGTTGCGATTCAACTCCACTGTGTTACTGAGTGACTATACTGAATGACTTGACAGTTGGGGTGGGTATGTTTGGGAACTCGTTGGTCTGATTGCCCCTGGCTTGTTAGTGGCATCTTTCTACTTTTTCATTGTGGTGTCTTTCAGTCTGGTCCTCAATTGTCTTTAGCCATGTTGTTTTTAGACCGTCTTCCACTACACCAAGCATCATGTGTCTTTATGTACTATGTCAGTTTCTCATATTTATTAGTCTTTCTTAGACTTCATTTGTTGTTTGTACTTTTTACATCAAAGATAGACCCATGTGTTAATTTATCCAAAAGCAAATAGTCCAAAGAAACTTAGTGGTGTGGCTGTTTATGTTTTCATGCTTTTAATTAATGCACTGGATTTGTTTATGATTTCGATTGAAGGATTAAATGTTTTGCCAATGTATGTTCAACCTTCCCCGCACTTGAATTTTGTCTGTCCTCCGTTCAGAGAGACACTTTCTAATTTAGGAGTTGAGTGTGTGAAATCATTGTTGCCTTTGTACAAACTTGCACAAATTAGTTGGAATGTGCATAACATCTCAAATGGCTTGACCAATGCTATATTGGAAGTGAGTGTCACACACCAAGGTACATCTTGATAACCTTCCCATTCAGTATAGATAGTTCAGACTTAACTTTCCTCTGTCCAAAGCAGTAGtgtgcttctttttttttttttacctcaaatTCTATGACTGAAGGACATGCAGTAAAGGCTCCGACATGATAATTTTTGGATCTGTCCAATATGATCAAATAGTAAGTGTAGCATATAGATAATGGAACTGAAATTGATGTTTTAGTTTGGTCTTTTTTTTTTAGCAACCGTAGTGAATGGATTTTTACCTGTAGATCTTAAATTAGGATTTCAAGCAAAAAATGATCCTGAACACGCCGTCGTTGATGTCGGTAtctccaatactactactacgaTTGTCTCATACGCTTTCTTTGGTAAGATTAGAATTATTACAAGATATGCATGTAATCAATACTAGAGTACTGATCTATTCTATCATATAAGCCAGTGTGTTTCTTCTAAGAGGGAACAGTTTCAGGGGGTCAGAAGTTGCTCCTAGGCACAGATCTAAGATCTGCTTAACCTCCCAAAATCCTAGCTTTAAACATTAGGGGCAAAGGCACAGACTGACTTTAGCTCAGTCTAGGGGCAACTTTGACGTACTCCTTTCAGGGGTGGCAGTGTGTAAATACAAGAGAACTGCTGTTTTATTCCACTAGAGGGAGCAAGTGTTGCAGAAATGGGGAGCACCGTTGATAACACCATACCTCTTTTTATAAACTAGCATTTCAAAGGTTTTGATACTCACAACTCAAGCTAAATACTGTTATAGAGAACTAAATTCAAActtaaaataatacaaaaaattgCTGCTAACCTATGGCTTCACAGGAACACAGGTCGCAATCTTTTTCCATTGGGTGTGTTGAAAAAAGATGCAAATGTTAACTGTAAATACAAGATGGCTAACATGAATAGTCTTTCCCTCATGTTCAGAATTTTTGATGCTCAATTGGaattgagaatagtctgtgtTGTTATTTTATGGAGACTTGTCATGCTTTTCTTTTTATACTCTGCTGggctgcaaaaaaaaaatatttcaagtTTCTTATTTTGATTCCATAATTTGTCATTTTATCACGCTTTGGCAAATAGTTTTGTTCTGTTTTTGTGGATTTGAGTTGTCTTATCGGTAGGCTTAATTTATACTTTTGTAGTGACACTATTTTTATACTACTGATAGGATCAAGAGTCTTTTGTCAGGCGTGACAGCGCTGTACAATGTTATGAAATACATTACCCACTGTAGTATGTGCTGTGTGAATAAACTGGCTGAAATGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU441188 lncRNA upstream 38982 30635717 ~ 30635954 (+) True G388483
TU441184 lncRNA upstream 39581 30630362 ~ 30635355 (+) True G388479
TU441182 lncRNA upstream 45287 30629352 ~ 30629649 (+) True G388477
TU441177 lncRNA upstream 46921 30627646 ~ 30628015 (+) True G388472
TU441153 lncRNA upstream 62430 30612239 ~ 30612506 (+) True G388448
TU441260 lncRNA downstream 17278 30728938 ~ 30729182 (+) True G388554
TU441321 lncRNA downstream 114049 30825709 ~ 30825985 (+) True G388615
TU441322 lncRNA downstream 114640 30826300 ~ 30826523 (+) True G388616
TU441323 lncRNA downstream 117582 30829242 ~ 30830252 (+) True G388617
TU441329 lncRNA downstream 128980 30840640 ~ 30840877 (+) True G388623
XM_036977267.1 mRNA upstream 178976 30486493 ~ 30495960 (+) False rgs3a
XM_036977271.1 mRNA downstream 30194 30741854 ~ 30855598 (+) False LOC110522910
XM_036977272.1 mRNA downstream 30194 30741854 ~ 30855598 (+) False LOC110522910
XM_036977274.1 mRNA downstream 254479 30966139 ~ 30972343 (+) False LOC110522913
XR_002473470.2 mRNA downstream 1441248 32152908 ~ 32160417 (+) False LOC110523608
XM_021602468.2 mRNA downstream 1546268 32257928 ~ 32270782 (+) False lhx3
TU440680 other upstream 387112 30286951 ~ 30287824 (+) True G388019
TU440079 other upstream 776802 29896986 ~ 29898134 (+) True G387516
TU439971 other upstream 928742 29741800 ~ 29746194 (+) True tbx5a
TU438959 other upstream 1744005 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 2257381 28416605 ~ 28417555 (+) True G385805
TU442960 other downstream 1248695 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 1508521 32220181 ~ 32220533 (+) True G390393
TU444420 other downstream 2447166 33158826 ~ 33162980 (+) True G391513
TU444741 other downstream 2649297 33360957 ~ 33361341 (+) True G391805
TU445804 other downstream 3435814 34147474 ~ 34148701 (+) False G392776

Expression Profile