RNA id: XM_021602658.2


Basic Information

Item Value
RNA id XM_021602658.2
length 2715
RNA type mRNA
GC content 0.47
exon number 12
gene id ggt5b
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 36797363 ~ 36805752 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gatttcttttcttttttttttacgcgTGGGGGAGGGGGATTTGGTGCATAAATTGGAGGGCTCATTGGCTACTGTACCACGCGCTCCTGTGACGGGACTATACAATACCATTCTCCGCTGGGCAGAAAGTGCTCTTGGAAAAGTTTTACTCCTGAAAGTATGGCCAGATATAAGCCCTGGCAGTTTGGTTGCTGTCTCTGTATTGGTTTATTGGGTGCTATAATATCCATTTGTCTCTGCATAGCCTTCGATGTATTTATCCACCGAGGATGCTCGGAGGACACCTTCAAGAACGCGGCGGTTTCTGCGGACTCTCAACTTTGCTCAGAGATTGGCAGAGACATACTGCTAGAAGGAGGGTCGGCAGTAGATGGGGCCATTGCAGCTCTGTTGTGCACCTCACTGGTCAACCCTCAGAGCATGGGCCTGGGAGGAGGCTCTATATTTACTGTTAGGGATACATTTGGTAAGGTGAAAACCTTCAGTTCGAGAGAGACTGTCCCACAGTTATTCAAAGCTGACCTGCTGAAGGGCTGTCCCACATCTGTCACATTTATCACAGGTAGTCAATGGATTGGCGTTCCTGGAGAGTTGCGTGGGTATGAGGTGGTTCACAGACAGTATGGGAAGCTGCCCTGGGCCAGGCTGTTTGAGCCCACCATTAGACTGGCCAGAGAGGGATTCCCTCTGCCGCCCTTCCTGGGACGCCTCCTTAACTTCCCAATCATAGAAAACCTGGTGAAAGCAACATCACTCTGTGAGGTGTTCTGCAACAAGAACAAAACGGTGCTGGGCATGGGGGACATATTGAAGTTCCCTAAGCTGgcggaaaccatggaaaccattgCAGAACAAGGAGCAGATGCCTTTTATACTGGCCAAATTGGACTTGACTTGATCCAAGATGTAAAAGCAGCAGGTGGGACCCTAACCATGGAGGATCTGAAGTCATTCCAAGTCAGAGTGGAAGATGCCTGGACTGTTCCTCTGGGAGATTACCAGATGCACATCCCTCCACCTCCAGCAGGGGGAGCCATGCTTGCCTTTATTCTCAACATCATTAAAGGGTTTCATTTCACCCCCAGGTCCATGGAGGGGGACCAGAAGGTCCTAACCTATCACTGCTACATTGAGGCAGCTAAATTTGCTAACGGACAGAGGAGACGCGTCCGCGATCCTGTCTTCAACCCTAAAAAAGATGCATCGTATATGGTGGACTCAGATTTTGCTGATCGGATCAGGTTATTGATCAGTAAAAACCGTACCTATAACAACTCCTACTACAACATCACACCTTCCCCTGACCGCTTTGGGACCACACACGTGTCAGTCCTGGCTGAAGATGGATCTGCAGTCTCTGTCACAAGCACCATCAACCAAATTTTTGGTGCAGCGATTTACTCTCCTAGAACAGGCATCATCCTTAACAATGAGCTGGCGGACTTCTGTTTTAGAGCAGAGAGAGTCAGTGCAGGTGAACAACCTCCCTCTTCAATGGCTCCAGCTATACTGAGCTCCAGCTCTGGAAAGAATACCCTTGTAATTGGGGGATCTGGGGGCAGCATGATCACCACCGCCATGGCCCTGTCAATCATGAACCACCTTTGGTTGGGGATGAGTTTGAAAGAGGCCATTGCTGCTCCTGTAGTGTTTGTTGACGGCAACAACAACGTGAACTTTGAGCCTGCCTTTGATAAGTCTGTGATAGAGGCCCTAAAGTTAATTGGACACAGAGTGACAGACTACCCATACTTCTTCAACGTGGTCAATGCTGTGGCCAAGGAGGACAAATGCATCACAGCTGTGTCAGACGGCAGAAAGCAGGGCAAAGCTGCTGGCTACTGACCAATAGAAAACCAGGACATTAAGAGGTTCCCGGGACCAGGTGTTCCCTTACTCAGGTCTACAGCCAAATAGTGGGCCTCAGGACACTGCAGTAGATCCAAGGGGATCATCATTTTAGTGAGATGTATTTTTATAGTTCATTTATCTTTATATATTTAACCAACAGTCcaagagccttattctaaaccaACAGTCCAAGAGCCTTAAGAAGAATCAAATGTGCCTCTTGACAAAATAGTTTGGGCTTTTTTGGGGGGCCTCTCACTTTGGCACTCAAATGGATGGAGTTTCACATTTTAcaaagtacatacagtacatatttgTTCTTGAGGACTTACTGCACAGTACACATAGAGTATAGTGAGGTCCTGAAGGAACTGACATGGGAACAGAAGGTCAGTACTGCCTGTCAGCCTGTGGTATCATGGGGCTCTTGCTGTGACCACAAGGACCTGTCAGATTCAGGCAGAACATGTAACAACACAATCCTCCAAGTGAATTTATTAGTCCTTCTCTGGAGTGTAGTAGCAATACTCTGAGACTCACACTTTCATTAAGATAAAACAGGCTTTCTGCAGCCCCCTTTCACAGTACATTGTAATAGAATCAACATCTGAAATAGCAAGTAAATCGGTTAGAGGGGCTGAATGAATTCTGGTGCGATAGTGATAGTGTGCAATCTTGCAAAAGCTTTAATGGCACGTATTACCAAAATGTGAAAAGTAATGAGCACTGATGTTGATACTGTGAGAGTACTGTGCTAGCTTTTTATGTATTTAATTGACCTCACCAAGGCCTGTTGTCACAAATGTACAGATTTATATAGGTCCCCTCCAGGTCTATTAAAACTTCAACTAGTGTTAACTTTCA

Function

GO:

id name namespace
GO:0006749 glutathione metabolic process biological_process
GO:0003840 obsolete gamma-glutamyltransferase activity molecular_function

KEGG:

id description
K18592 GGT1_5, CD224; gamma-glutamyltranspeptidase / glutathione hydrolase / leukotriene-C4 hydrolase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU449211 lncRNA upstream 48841 36743572 ~ 36748524 (+) True G395888
TU449047 lncRNA upstream 100918 36695208 ~ 36696447 (+) False G395748
TU449048 lncRNA upstream 100918 36695349 ~ 36696447 (+) True G395748
TU448988 lncRNA upstream 145693 36649959 ~ 36651672 (+) True LOC110522857
TU448965 lncRNA upstream 211486 36582772 ~ 36585879 (+) True G395677
TU449307 lncRNA downstream 65066 36870818 ~ 36871028 (+) True G395972
TU449400 lncRNA downstream 199901 37005653 ~ 37036550 (+) True G396058
TU449411 lncRNA downstream 233974 37039726 ~ 37047176 (+) True LOC100653458
TU449415 lncRNA downstream 242609 37048361 ~ 37048706 (+) True G396069
TU449423 lncRNA downstream 250896 37056648 ~ 37057052 (+) True G396077
XR_002473377.2 mRNA upstream 145615 36649948 ~ 36651750 (+) False LOC110522857
XM_021602653.2 mRNA upstream 152167 36639656 ~ 36645198 (+) True LOC110523714
XM_021602650.2 mRNA upstream 182785 36607402 ~ 36614580 (+) True LOC110523711
XM_036977390.1 mRNA upstream 227722 36519405 ~ 36569643 (+) False antxr1b
XM_021602661.2 mRNA downstream 22724 36828476 ~ 36883225 (+) True lrrc75bb
XM_021602665.2 mRNA downstream 125985 36931737 ~ 36957641 (+) False LOC110523723
XM_021602666.2 mRNA downstream 125985 36931737 ~ 36957641 (+) False LOC110523723
XM_021602662.2 mRNA downstream 125986 36931738 ~ 36957641 (+) False LOC110523723
XM_021602664.2 mRNA downstream 125986 36931738 ~ 36957641 (+) False LOC110523723
TU448219 other upstream 496075 36280300 ~ 36301290 (+) True G395034
TU448184 other upstream 590749 36202901 ~ 36206616 (+) True G395005
TU448071 other upstream 762598 36033260 ~ 36034767 (+) True you2
TU448080 other upstream 792536 35966937 ~ 36004829 (+) True G394910
TU448046 other upstream 891584 35905112 ~ 35905781 (+) True G394882
TU449364 other downstream 159332 36965084 ~ 36965652 (+) True G396022
TU450033 other downstream 603449 37409201 ~ 37410899 (+) True m17
TU450409 other downstream 1112942 37918694 ~ 37921236 (+) True srsf9
TU452179 other downstream 2508582 39314334 ~ 39317715 (+) True LOC110523777
TU452856 other downstream 2956364 39762116 ~ 39765843 (+) True G399169

Expression Profile