RNA id: XM_021603331.2


Basic Information

Item Value
RNA id XM_021603331.2
length 3736
RNA type mRNA
GC content 0.49
exon number 5
gene id ccdc181
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53922807 ~ 53928736 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TAGGTCTCTATGACAACAGGACTATTAAAGCCTTTAgtggagcaggggagagggacacGCACAGGAGATTATCTGGACAGGTGCTCCGGCCGGCTTGTATCACCAAAATGTAGGCCATTAAAACGAATAACGAGTTCCCACATAAGAGGATATAAtacacattattttatttttattctgaGTAAAAAGGAGACGCACAAGCATCTGGTAGTGGTGAGTTCATTTCGATGTTTGGGTAACGGTACGGTTGTGCTTTAACTATTTCAGACTTGCGCCTCATAATAAAGTGTGTAGGCTATTGCTTGTGGAAATAGTAGCCTATTCTAATGTTACATCATCGTGTTAGGCTTCTATGTTTCCTCTTGAATTGGGGCCTAGAGACCAggctatgtctgtctgtcacatcaCGCAGTCCTGTTGTATCAGTAATATTCTACAAGCTGCAATAAATCTGCCAGTAACTCCAACAACAGTTAAGACAAGTTAGCCTATTTCACAATACGATCCCATAATAAAAAATAATGCAAACAACTGCACCTGTCCCAGGTTGAAGTGTTTATCCTGCGCTATGCGTCATTTGGCCATGGGAGGGCCACGGGAGTCGTGAATACAGGTTCACTATAGTATTGTGTGACATATGATCTGTGAGTGTTCAGAAGTTGTATGCTTGTGATGTGTGCTCAAAACAGTCGGGAATGCTATTCTATTTTAGTTGTATGAGGGATTGTCAATGCACAAACTCGAACTGAACTGGTGTGAATTTAAATACAATGGACGTATGTATACCCTTGGAAGTATAATTATGGGGCTATCATCACAATTGGCCCTGCATATACAATGCTCCGGTTGATCTTCTATTGTCCTTCACGCTATTCCTTTGGAGAAGATGAGTCTGGTGCCAACGAGCACTAGGACCCAGGAGGAGTATGAGGACGACTTTGAGAAGGACCTGGATTGGCTGATCAGTGAGGAGGGGACGAACGATGGCCAGGAACCTGACTACGAGGACATCGAGGCTGAAATAGACAAGGAGctgaaggaggaggggaaggaggaagagaaaaagcgagggaggaaggaggacaagaaaagcctgaaggaggagaagtGGGCGAGCGAGTCAGAgaaggcggaggaggaggagaggtggccCTCGCCCATGGAACCTTTGGAATTCGACTCTGACCGAGACAGTCCATATAAGGGCGGATCCCCCCTAGCGCCGCCACCTCCGGTGCTGGAAGACCAACCGGAAGAGGAGAAGAAGTACATCCTGGAGAAGATCCAGCTAGCCAATCGGCAGCTGCAGGACCAGGAAGCGCCGGACATGACTCGGCGCCGACGCCTTCACTTCAAAGAAACGCTGGTGGATTTGGTGGTGGCGCCACTGGAGTACGAGAAAGACAGCAGCACCCCCCAAAAGACGGGGGTGGTAGAGCAGGTGAGCAGCACGGCCAGCAAGGAaatggaggtagagagtgagGTGTCAGGGAAGCTCTCTGAGCTGAAGCTCAACCCTCgggaaggggaaggaggagggcagGGGCTCAAGGGTGGGGGTGGTGGGGAGGCTGGCCAGAGTGGACTGGGGAAAGAGGGCAAAGTCCTGGTGGAGAAAGATGGCAAGTTTGACCTTGTCAGCCTGAAGGAGGTGGAGAGCCGTGGCCTGATGCTGCCACCTTTAGCGAGCTTCCCCAGCGACAACTCACGCTTGTCCTCCCGTCCAAGTGACCTAAGCCCGAACAAGACCCCCACATCCTCCCCGCTGCGTCCCATCTCTAGCACTATGTCCATAGGGATCGAGCACCACCGCGCCCCCAGACCTCCGGCCCAGCCCAGGAACCGGCCCAACTCGGCCAGTCACAGCCAGAGGGGCAGCGGGGGGAGGGGCACCAAGCGCAGGGTGCAGTCGGCCAACAGTGCCCCTACCCAGCAGGCCACCTTCACTCTCTCGCCCCAACAGAAGGAGCTACTGAACAaaatacaggagaggagagagaggctcgCCAGAGAGgaggagcagaggaagagggaggaggatgagCAGAAGCGTCAGGAGAATGAGCTGGCGTTCCGGGCATGGCTGGTGAGGAAGAGGGAGCAGttgcaggaggagaagaggatcgACAGagcccaggagatggagagaaggaatgGCAGGAGGGAGCACAGTGACCCAGGCGAGGCCTTTAAGTCGTGGCTGCAGAGGAAACACGAacaacagcagagagacagacagctggaggagatgaagaggctggaggaggagagtggattCTACATGCACAACCGAGAAGAGTGTGAACGAGCCTTCAAACTgtggCTGAAGAAGAAGCGGGCAGAGAAGCGGGCGGAGCAGCAGGCGGCCAGAGAGCGCTCCCGCAGGCTGGTGTTTGAGGAGCGGCGCGCCAGGCGCATGCAGGACCTCCTGTGCACCGTCAACGAGACCAAGCCTTTCCGCTTCACTGAGCACCTGGCGTACCGCTTCTGAACCCACCATTCGCAATTCGAGAGGAAATAGTCGAGATCTGAGCAAAGCTAAGAGTACaggatacacagagacacatgaaCACGGATGAAATTGTATACGACTTAGGGCCTACATAGTTGTCCATTTTTGCTCTATAAAAGGTACAACTTattgtttttgggggggggggggaaatcaccAAAGAAATCTAGGCTCTGTTCCAGTATCAACTAGCATACAACTTAAAATGAGGCATTTTTACTGAAAGTGAATCTTTAGATGGGATCAGCACTGTTGACTACTGTTGAGAGAAGGGCTTTGTTTTCTACCTTTTCATTTGTCACAGATGATCTCCGAAGTTCTGTTCCCTTCGACGTTACCTCGTAAGACATGCACAACTCCTCAGGGTTCCGAATTGATCAGGCGTCGGGGATCAATCCCGTGCTCgctgtgtacagtatataaagAGATTATTTGAGCAAATGAATGATTATAACCAAGGTGACTGGCTCAATAGCTGTGCGACGACAAATATATATACAGAATGTGATCATAGGTCTACTGGCACTTGTTCTCTACATTGtcaacagcctcctctctgttgCTGATGCACTTTAACCTAGCCTACTAGAAGACATTGAGCTCACCAATGCCTGCAGTGCTAGTAGGTCGTCTCGGTGTGGGTAGCCCATATTGCCACTGTTACCACAATGCCTTTATAAACCGTTTGTCACCGAGTGTTTTTAAGTTTATTCTTAAATCTATCTTAAGTTAGGTCCTTTGTAGTAGTGGCATCTACGCCGACCACATTGTCTTCCGTCCGAGGGCGTCATTCTACGGCTTCATTCTGAAGATGTTTTGAGGGTGGGGGTGCTGCGAAGATTTTTTTGGGTGTGTGCATTTTTTCCGGATTTCTCAGTGGGTGCTGGAGCACCCCTATTTCCCACGGCTATCTGATTTGAGACAATGCACTTACTATAGATGCTAAGAGATTTAAAAAGAACGATGGTTTGATACGGCATACATCGTTTGTAATTAGACAAGTCTGAGTTGGAACAGTCAGTACTATGCATAATTCACCTCTATGTTTATCTTGATATGTAAGATCGATTTACTTATCGTCATATTCATGTATagattttcaaatacatttttgtaaAACCACTACATGAAATGATGTTGGTTTACAACTGAACCTATAGACAATGTGTTCAAATTGTAAACAATTTACAAGTTCCCAAATAATAAAGGACACGGTTTAAGTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU470794 lncRNA downstream 67998 53854280 ~ 53854809 (-) True G415393
TU470752 lncRNA downstream 96223 53826216 ~ 53826584 (-) True G415363
TU470741 lncRNA downstream 111581 53811000 ~ 53811226 (-) True G415353
TU470735 lncRNA downstream 116550 53806036 ~ 53806257 (-) True G415347
TU470682 lncRNA downstream 204604 53717766 ~ 53718203 (-) True G415297
TU470842 lncRNA upstream 9432 53938168 ~ 53939299 (-) True G415439
TU470765 lncRNA upstream 33206 53961942 ~ 53989222 (-) False LOC110524038
TU470767 lncRNA upstream 33221 53961957 ~ 53989222 (-) True LOC110524038
TU470863 lncRNA upstream 65283 53994019 ~ 53994561 (-) True G415460
TU470871 lncRNA upstream 73712 54002448 ~ 54005673 (-) False G415464
XM_021603324.2 mRNA downstream 172539 53746858 ~ 53750268 (-) True LOC110524031
XM_036977827.1 mRNA downstream 177244 53740644 ~ 53745563 (-) True LOC118964619
XM_021601398.2 mRNA downstream 187903 53723390 ~ 53734904 (-) True LOC110522968
XM_021603314.2 mRNA downstream 546208 53334333 ~ 53376599 (-) True LOC110524026
XM_036977834.1 mRNA upstream 12207 53940943 ~ 53945411 (-) False prrg1
XM_036977833.1 mRNA upstream 12207 53940943 ~ 53945438 (-) False prrg1
XM_036977836.1 mRNA upstream 12207 53940943 ~ 53945596 (-) False prrg1
XM_036977835.1 mRNA upstream 12207 53940943 ~ 53945602 (-) True prrg1
XM_036977837.1 mRNA upstream 33206 53961942 ~ 53973206 (-) False LOC110524038
TU470822 other downstream 29901 53890760 ~ 53892906 (-) True G415420
TU470639 other downstream 303943 53617738 ~ 53618864 (-) True G415256
TU470637 other downstream 304048 53617683 ~ 53618759 (-) False G415256
TU467825 other downstream 2310245 51558378 ~ 51612562 (-) True G412613
TU467562 other downstream 2545677 51373465 ~ 51377130 (-) True G412372
TU470869 other upstream 74995 54003731 ~ 54005673 (-) True G415464
TU471641 other upstream 434550 54363286 ~ 54386228 (-) False G416110
TU472396 other upstream 1212579 55141315 ~ 55160267 (-) True LOC110524071
TU473281 other upstream 1680099 55608835 ~ 55609730 (-) True G417527
TU474559 other upstream 2780062 56708798 ~ 56709840 (-) False LOC110522975

Expression Profile