RNA id: TU439489


Basic Information

Item Value
RNA id TU439489
length 435
lncRNA type intronic
GC content 0.51
exon number 1
gene id G386978
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29397652 ~ 29398086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

agagaagtgaggaggagaagagggagagtggagagaagtgaggaggagaagagggagagagggaaatagaaaaGAAAACGCTTGCGTGCCGCCACTCAGGGAAGagctggaggacagagaggagaaactGTATCACTCTGAAGGAGTGCTGGAGCAGGAGCGAGTGAGTGAAGAagtgagaaggaggagaggaaactgTCCTAAACAAGGGGAATGGTAGATGTGTTGAGTTCCAGTGACGGAATCTGTGTGTTCCTGCTGCtgtgtgatgatgatgtgtctgttTTAAGTGGAGGGGGGATAAACCGCTAGACTGTAGTCCCTATAGAACATCACGGCCCCTCTGCTTTGAAAGAGGAGTGGAGTTGTGGGGGTTGGACAAATGTGACCCCCTCTTGACACTCCTTAGAGCTATAAGGAGAGGGTTATGAGGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439487 lncRNA upstream 7049 29390300 ~ 29390603 (+) True G386976
TU439486 lncRNA upstream 7537 29389838 ~ 29390115 (+) True G386975
TU439485 lncRNA upstream 8289 29389051 ~ 29389363 (+) True G386974
TU439484 lncRNA upstream 10177 29387270 ~ 29387475 (+) True G386973
TU439476 lncRNA upstream 19713 29377694 ~ 29377939 (+) True G386965
TU439491 lncRNA downstream 1528 29399614 ~ 29399843 (+) True G386980
TU439492 lncRNA downstream 1945 29400031 ~ 29400296 (+) True G386981
TU439493 lncRNA downstream 2444 29400530 ~ 29400752 (+) True G386982
TU439497 lncRNA downstream 10713 29408799 ~ 29409022 (+) True G386986
TU439498 lncRNA downstream 11849 29409935 ~ 29410157 (+) True G386987
XR_002473468.2 mRNA upstream 85324 29304337 ~ 29312328 (+) True mtfp1
XM_021602393.2 mRNA upstream 85929 29304337 ~ 29311723 (+) False mtfp1
XM_021602390.2 mRNA upstream 135011 29254638 ~ 29262641 (+) False LOC110523578
XM_036977228.1 mRNA upstream 135011 29255030 ~ 29262641 (+) True LOC110523578
XM_036977223.1 mRNA upstream 209684 29176622 ~ 29187968 (+) False LOC110523576
XM_036977237.1 mRNA downstream 314842 29712928 ~ 29721236 (+) False LOC110523583
XM_036977236.1 mRNA downstream 314845 29712931 ~ 29722688 (+) False LOC110523583
XM_036977240.1 mRNA downstream 314846 29712932 ~ 29722688 (+) False LOC110523583
XM_036977238.1 mRNA downstream 314847 29712933 ~ 29722688 (+) False LOC110523583
XM_036977239.1 mRNA downstream 315613 29713699 ~ 29721236 (+) False LOC110523583
TU438959 other upstream 466721 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 980097 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1492921 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1690574 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1714259 27675352 ~ 27683393 (+) True LOC110522888
TU439971 other downstream 343714 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 498900 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 888865 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 2562269 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 2822095 32220181 ~ 32220533 (+) True G390393

Expression Profile