RNA id: TU439501


Basic Information

Item Value
RNA id TU439501
length 253
lncRNA type intronic
GC content 0.44
exon number 1
gene id G386990
representative True

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 29413217 ~ 29413469 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTTACTTCTGTAATGTGCAGTTCAGTCAGATGCCCTTGCGGAATGCACATCTTACCTGTTTTTTTGCCAGACATTTCTCACAATAGATGCCACTTTTGAGCGTTGCAGATTGGGCTGCActctcagaccagcctctctcattgATAGACCATGATTTATTATATGATCAATTATAGTAGCCCTAATCTCATTTGAGACTACAGCTCTTgatcttcctctcagtcttcttccaccgtcccctctccctctccc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU439498 lncRNA upstream 3060 29409935 ~ 29410157 (+) True G386987
TU439497 lncRNA upstream 4195 29408799 ~ 29409022 (+) True G386986
TU439493 lncRNA upstream 12465 29400530 ~ 29400752 (+) True G386982
TU439492 lncRNA upstream 12921 29400031 ~ 29400296 (+) True G386981
TU439491 lncRNA upstream 13374 29399614 ~ 29399843 (+) True G386980
TU439506 lncRNA downstream 3000 29416469 ~ 29416702 (+) True G386995
TU439509 lncRNA downstream 5409 29418878 ~ 29419144 (+) True G386998
TU439456 lncRNA downstream 31950 29445419 ~ 29446138 (+) True LOC110523581
TU439672 lncRNA downstream 64018 29477487 ~ 29477882 (+) True G387138
TU439684 lncRNA downstream 72721 29486190 ~ 29486413 (+) True G387150
XR_002473468.2 mRNA upstream 100889 29304337 ~ 29312328 (+) True mtfp1
XM_021602393.2 mRNA upstream 101494 29304337 ~ 29311723 (+) False mtfp1
XM_021602390.2 mRNA upstream 150576 29254638 ~ 29262641 (+) False LOC110523578
XM_036977228.1 mRNA upstream 150576 29255030 ~ 29262641 (+) True LOC110523578
XM_036977223.1 mRNA upstream 225249 29176622 ~ 29187968 (+) False LOC110523576
XM_036977237.1 mRNA downstream 299459 29712928 ~ 29721236 (+) False LOC110523583
XM_036977236.1 mRNA downstream 299462 29712931 ~ 29722688 (+) False LOC110523583
XM_036977240.1 mRNA downstream 299463 29712932 ~ 29722688 (+) False LOC110523583
XM_036977238.1 mRNA downstream 299464 29712933 ~ 29722688 (+) False LOC110523583
XM_036977239.1 mRNA downstream 300230 29713699 ~ 29721236 (+) False LOC110523583
TU438959 other upstream 482286 28926277 ~ 28930931 (+) False spag8
TU438217 other upstream 995662 28416605 ~ 28417555 (+) True G385805
TU437511 other upstream 1508486 27904467 ~ 27904731 (+) True G385171
TU437387 other upstream 1706139 27706714 ~ 27707078 (+) True G385053
TU437362 other upstream 1729824 27675352 ~ 27683393 (+) True LOC110522888
TU439971 other downstream 328331 29741800 ~ 29746194 (+) True tbx5a
TU440079 other downstream 483517 29896986 ~ 29898134 (+) True G387516
TU440680 other downstream 873482 30286951 ~ 30287824 (+) True G388019
TU442960 other downstream 2546886 31960355 ~ 31960745 (+) True G390184
TU443183 other downstream 2806712 32220181 ~ 32220533 (+) True G390393

Expression Profile