RNA id: TCONS_00033756


Basic Information

Item Value
RNA id TCONS_00033756
length 334
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_016057
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 728660 ~ 730230 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTCCAGAGTATATTTTACCTGAAATGTACAATGAAACAAACCCTaagcaaaatatttaattttcagaaaattgtagacagcgccctctagtgcatttgtcatctaaaacgtgcAGTGAAATGATCtcagagcaatgtattttacattttacataaatTTTGCTAATGTCTtctagtagatttgtcatctgaaacAAAGAAACTAACTCTAAGCATAGcatttcattttcacaacaatgtacacagcgccctctagtggatttttttttatctgaaagatGCCATGAAACTAACCCTAAGGAACATGTTTAATTTTGGGAAaattgtagacagcg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033343 lncRNA downstream 113804 552481 ~ 614856 (-) False XLOC_016051
TCONS_00033342 lncRNA downstream 113804 552481 ~ 614856 (-) False XLOC_016051
TCONS_00033755 lncRNA downstream 113856 565097 ~ 614804 (-) True XLOC_016051
TCONS_00033341 lncRNA downstream 196216 495311 ~ 532444 (-) True XLOC_016050
TCONS_00033340 lncRNA downstream 233220 492923 ~ 495440 (-) False XLOC_016050
TCONS_00031734 lncRNA upstream 153876 884106 ~ 898791 (-) True XLOC_016060
TCONS_00033757 lncRNA upstream 200838 931068 ~ 1195912 (-) True XLOC_016061
TCONS_00033758 lncRNA upstream 388522 1118752 ~ 1121302 (-) True XLOC_016063
TCONS_00033344 lncRNA upstream 584936 1315166 ~ 1331542 (-) True XLOC_016067
TCONS_00033345 lncRNA upstream 675281 1405511 ~ 1406153 (-) True XLOC_016069
TCONS_00031729 mRNA downstream 6490 720781 ~ 722170 (-) True XLOC_016056
TCONS_00031728 mRNA downstream 12234 713080 ~ 716426 (-) True XLOC_016055
TCONS_00031727 mRNA downstream 21508 696244 ~ 707152 (-) True XLOC_016054
TCONS_00031726 mRNA downstream 39613 686873 ~ 689047 (-) True XLOC_016053
TCONS_00031724 mRNA downstream 338793 374365 ~ 389867 (-) True XLOC_016048
TCONS_00031730 mRNA upstream 1261 731491 ~ 732864 (-) True XLOC_016058
TCONS_00031731 mRNA upstream 124214 854444 ~ 879800 (-) True XLOC_016059
TCONS_00031732 mRNA upstream 151724 881954 ~ 898899 (-) False XLOC_016060
TCONS_00031735 mRNA upstream 214111 944341 ~ 985417 (-) False XLOC_016062
TCONS_00031737 mRNA upstream 444548 1174778 ~ 1188707 (-) True XLOC_016064
TCONS_00031725 other downstream 145093 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031733 other upstream 152106 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031736 other upstream 220018 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031757 other upstream 1571128 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031768 other upstream 2395728 3125958 ~ 3126074 (-) True XLOC_016090
TCONS_00031770 other upstream 2657342 3387572 ~ 3403034 (-) False XLOC_016091