RNA id: TCONS_00031724


Basic Information

Item Value
RNA id TCONS_00031724
length 2302
RNA type mRNA
GC content 0.50
exon number 7
gene id XLOC_016048
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 374365 ~ 389867 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

atcgCGAGACGAGACTTCCGTTCTCCCGCGTCAGTTTCTATTTCTCGTGTCCCCGTTTGTTgataactgtaaataaactgcaaataATCTAATTTACACACCACCATCAGCAGGAATAAACACGTTAAATCAGCGTGACCATGGCGGAGAGTGTGTCTGACAGCAGCGTGCAGTGCCCGGTTTGCGCTGGTCTCTTTGAGCCGAGCAGCATCAACCGTCACCTGGACGCGTGTTTACAGAGTCCCTCTGATCCCGGTCCACCGGCCAAAAAACCCCGCATTAACTCATCCGACAGCCGTCCTTCTGCGGTCTTTTCCATGTTCCAGAGCCGGCCGAGAGCATCAGAAGCCCTGGCCGAAGACAGTGGAGAGAGCGCGGCGGGCTCCGCAGCTCCAGCGGCGGCGGTGCAGCAGCCTCAGTGTCCGGCTGAAGTGGCTCCACCGGCGGCCTGTTCTCCCAGAGCGCTGCGCCTGAAGAACCAAAAGCCGCTGGCGGAGCTCCTGAGACCGAGCACCCTGGAGGaatatttcggccagaataaactGATCGGAGAACAAACTCTGCTGAGATCCCTGCTGAAGTCGCAGGAGATCCCGTCTCTGATCCTCTGGGGTCCGCCGGGCTGCGGAAAGACCACTTTGGCTCATATTATCGCCAGTTCTATCAAGCAGAAAGGCACGGGCCGTTTCGTGACGCTGTCGGCCACCAGCGCTTCCGTCAGTGATGTGCGAGAGGTGATAAAACAGGCCCAAAATGAGCTCCGTCTGTGCAAGAGGAAGACCGTCCTGTTCATCGATGAGATTCACCGCTTTAATAAATCACAGCAGGACACGTTTCTGCCTCACGTGGAGTGTGGGACGATCACTCTGATCGGCGCCACCACAGAAAACCCGTCGTTCCAGGTGAACAGTGCTCTCCTGAGCCGCTGCAGGGTTCTGGTTCTGGAGCGTCTGTCGGTGGAGGCGGTGGGCTCGATTCTGCGTCGCGCTGTGGATTTTCTGGATCTGCGGATTCTGGATTCAGAGGAACGACACTCTTCAGAGATCTGCTCAGAAGCGCAGGTGTGTGTGGAGCAGAAAGCGCTGGACACTCTAGCGCACCTGTGTGACGGAGACGCTCGAGCCGCTCTCAACGGCCTCCAGCTGGCGGTGCAGGCGTGTGTGTTGCAGAGCAGCTCCAACCACAACAGAAGCAGCACAGTAGTGCGCGAGCAGCACATTAAAGAGGCTCTGCAGAGGTCACACATTCTCTACGACAAAGCAGgtgaggAGCACTACAACTGTATCTCAGCTCTGCACAAGTCAATGAGAGGGTCTGATGCAAACGCTGCCCTCTACTGGCTGGCCCGAATGCTGGAGGGCGGCGAAGATCCGCTGTACGTCGCTCGCAGGCTAGTGCGATTCGCTAGTGAGGATATCGgacTGGCGGACCCTGTGGCTCTCAGTCAGGCTGTAGCAGCGTTTCAGGCCTGTCACCTCATCGGTATGCCTGAATGTGAGGTTATTCTAGCCCAGTGTGCGGTTTATTTGGCCCGAGCTCCGAAATCTGTAGAGGTTTACAAGGCTTATAATAACGTTAAGATGTGTCTGAGAAACCACAAAGGCCCTCTGCCGTCCGTTCCTCTCCATCTGCGCAACGCTCCCACCAAACTCATGAAGAATCTGGGATACGCTAAAGGGTATAAATACAACCCAAACTACAGCGGGCCGGTGAAGCAGGAATATCTTCCAGAGGAGCTTCGAGGAGTCGACTTCTTTACCTGGACGCCCTCAGACAGCTAAACATGCTGCTCTTATTCAGAGCTTATCTTGTTTCTTGTCATAATATCTAAAAACacttaaatcaagaagcctttTCTAGACAAGTGTGAAATATAGTGCTGTTTTCAGAATAAAGTGAGTCAAGTGAGAAAACATGCTAATAATAATCCGATTTCAAactaaaaacaagattattttgcttgttttaatgtaaaactctcttcattttgactcattatttctgaaaacagcacaatattttctgctggtctagaaaatgctgaCTGATTTAATGAGCTTTGAGATATTTGAGACATAAACTCTGTCAGAAGAGCACAACTGCAGTGTGTGGCTATGAGAAATGGACTCTTCTAATTGGCTTCTGCCCTAATCACTGTTGCTGTATCTGATTATCattactgtatttcacacccATCGTCCAAATCACAACTGAAGGATCCTGCATTTGTTAATACTGCTATGAACCATtttatattatagttattaatgtaaataaaatggtAAATATAAAATCCATCATG

Function

GO:

id name namespace
GO:0006260 DNA replication biological_process
GO:0006261 DNA-dependent DNA replication biological_process
GO:0006281 DNA repair biological_process
GO:0006282 regulation of DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0017116 single-stranded DNA helicase activity molecular_function
GO:0008047 enzyme activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2415 Predicted to enable enzyme activator activity and single-stranded DNA helicase activity. Predicted to be involved in DNA-dependent DNA replication and regulation of DNA repair. Predicted to act upstream of or within DNA repair and DNA replication. Predicted to be active in nucleus. Orthologous to human WRNIP1 (WRN helicase interacting protein 1).

Ensembl:

ensembl_id ENSDART00000004848

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031722 lncRNA downstream 21586 352097 ~ 352779 (-) True XLOC_016046
TCONS_00033751 lncRNA downstream 29606 342478 ~ 344759 (-) True XLOC_016045
TCONS_00033749 lncRNA downstream 29768 335852 ~ 344597 (-) False XLOC_016045
TCONS_00033752 lncRNA upstream 15463 405330 ~ 458889 (-) False XLOC_016049
TCONS_00033753 lncRNA upstream 16019 405886 ~ 458907 (-) False XLOC_016049
TCONS_00033754 lncRNA upstream 16019 405886 ~ 458911 (-) True XLOC_016049
TCONS_00033340 lncRNA upstream 103056 492923 ~ 495440 (-) False XLOC_016050
TCONS_00033341 lncRNA upstream 105444 495311 ~ 532444 (-) True XLOC_016050
TCONS_00031723 mRNA downstream 9526 354424 ~ 364839 (-) True XLOC_016047
TCONS_00031718 mRNA downstream 80572 283764 ~ 293793 (-) False XLOC_016044
TCONS_00031719 mRNA downstream 81329 284183 ~ 293036 (-) True XLOC_016044
TCONS_00031717 mRNA downstream 168209 198565 ~ 206156 (-) True XLOC_016040
TCONS_00031716 mRNA downstream 176700 194742 ~ 197665 (-) True XLOC_016039
TCONS_00031726 mRNA upstream 297006 686873 ~ 689047 (-) True XLOC_016053
TCONS_00031727 mRNA upstream 306377 696244 ~ 707152 (-) True XLOC_016054
TCONS_00031728 mRNA upstream 323213 713080 ~ 716426 (-) True XLOC_016055
TCONS_00031729 mRNA upstream 330914 720781 ~ 722170 (-) True XLOC_016056
TCONS_00031730 mRNA upstream 341624 731491 ~ 732864 (-) True XLOC_016058
TCONS_00031725 other upstream 193584 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031733 other upstream 492469 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031736 other upstream 560381 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031757 other upstream 1911491 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031768 other upstream 2736091 3125958 ~ 3126074 (-) True XLOC_016090

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000098_01617418_01644911.mRNA True 3174 mRNA 0.43 9 CI01000098 1617055 ~ 1645859 (+)