RNA id: TCONS_00031718


Basic Information

Item Value
RNA id TCONS_00031718
length 2800
RNA type mRNA
GC content 0.54
exon number 14
gene id XLOC_016044
representative False

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 283764 ~ 293793 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGACACTGTTAAGCTGATCTCAGATCTGCCAGTTGTTTTGAGCTTCATAACTCAACATGAGGCACGAGGACGCCACACACACGCTCATATTTCtcgtatatttattattatttgtgtctGCTCGATGTGAGGTGACACAACGTCTGATTGAATGTGTAACATCATCTACAGAATATAATGTAGACGGCGGTAAAGAGGATCTGTTTGACGTCAATGAAGACGCTGGTCTTGATCTTTTCGAGGGAGATATTTTATATGATGAAACACTGGGGAGAAACTCTATTATCGGCGAGGAATACAGATGGCCCAAAACTATTCCCTATTACTTTGAGGACGATCTGGAAATCAACGCTAAAGGAGTGATCCTGAAGGCCTTCGAGCAGTATCGGCTGAAGACCTGCATCGACTACAAGCCCTGGACTGGAGAGGAAAACTACATCTCTGTGTTTAAAGGCAACGGctgctTCTCATCAGTGGGGAACCGGCGTGTGGGCAGGCAGACTCTGTCTATCGGCAGCGGTTGTGATCGTATCGCCACCATCGAGCACGAGTTCCTGCATGCGCTGGGCTTCTGGCACGAGCAGTCGCGCTCCGACCGGGACGATTACGTCTCCATCATGTGGGACCGCATCACAGAAGGCAAGGAGCACAACTTCAACAAATACAACGACAGCAGCTCGAGTGCGCTCAACGTGCCGTACGACTACAGCTCCATGATGCACTACAGCCAGAAGGCCTTCCAGAGCGGCTCCGAGCCCACCATCATCACCAGAATACCGGCCTTCAGCAGCGTCATCGGCCAGCGCATGGAGTTCAGCGACAGCGACCTGCTGAAGCTCAACAGACTCTACAActgcaCCAGCTCCTCCACGTTCCTGGACTCCTGTGACTTCGAGCTGGAGAATATCTGCGGAATGATCCAGAAGGGTGAAGCCGACAGTACTGCAGAGTGGCGGAGAGTTCCTGAAGCTGCGGGAGGACCGGACACGGACTACACCAACATGGGCCGCTGCGAAGGTAAGGGTTATTTCATGCACTTCAGCACGGCGGGAGGGCCGGAGGGGGCCAAGGCTCTGCTGGAGAGCAGGGTTCTGTACCCGAAGAGAGGCTTCCAGTGTCTGCAGTTCTTCGTCTTCAACAGCGGACACACTTCTGACCGGCTACGCATCTGGACACGAGAGTTCGACACCGAAAACCCCAACGGAACGCTGCGTCTCGTGCAGCAGATAcatgCTCCTCCAGGCGAGCGCTGGCAGCTTCAGCACATCAGTCTGAACGTCTCCAGAAAGTTCCGTGTGGTGTTTGAAGGCACTAAAGGCACCGGGAGCTCCGGCGGACTCTCAATAGACGACATCAACCTCTCAGAGACGCGATGTCCTGATCATGTGTGGATCGTCCGGGACTTCAAGAGCATTCTGGAGAACACACCGATGGACACGGCCATCTACAGCCCGCGCTTCACTTCCAGACTCGGATACAGCTTCCAGATGGGCCTGTACCCCAATGGGACCGCGGGGAACCCGGGCGAGATGGGAGCCTATGCTCATTTAGTATCTGGAGATGCGGCAGTGGACGGCGGGCTGGTGTGGCCTGCGCAGTGGAAGCAGATGACCATGATGATGATGGACCAGAACGCAGATATCCGCAGACGCATGTCCAACCAGAGGAGCGTGACCACCGACCCCAACATGACTGTGGAAGGATCTCTGAATCTGTTCTGGGATGATCCACGTAAAGTTGGTGTGAAAGTGACTGATGACAATGGGACGGAGTATTTCCGAGGCCCAGGCGCCGGGACCCCCGTGTACCTGACCCAGGCCAGAGCCCTGAGCCGGGACTTCATCAAGGGTGGAGACGCCATATTCCTGCTCACCATGGAGGATATCTCTGATCTGGTCGCTTCACAGCCTTTACCGTCCACAACTGTGACTCCAGCAACATCGGCTCACACCGGACCCACAAACCCAGACAACAGCACTACAGCCAGCCCGGCCACACACACCAGCTCCATTACACACaccagcgcagacacacacaccagCTCCAGCACCACCAGCTCCAGCTCCAGCACCACTGTTCCTCCTCCTGACCCGTGTGTGTCGCTGCAGTGTGAGAATGATGGAGTGTGTGTGCAGGACGACGCAGGACAGCCCGTCTGCAGgtgtgcgGTGGGCAGTGACTGGTGGTATTACGGCGAGCGCTGTCAGCACAAGAGCTCCACTCGGCACACAGTGGTGACGGCGGTGCTGGCGGCGGGTCTGACGCTGCTGCTGATGCTGGCCATCACCGCGGTCAGTGTGGTGTGTGTGAAGAAGCGACGCAAGACTGTCAAACTGGACACACACGACATCACCATGCACAACATACACTCCAAAGCCTGAACACACACAGGGAGACGCTGATTCTGGACGCCTGTCTGTTCTCTTCAATTAGAGAGCTGCcatctggatgcagacctggtgcagatgCAATATGAGCTGCATGCAAGGCTTTTTAATGCGCTCCCCTAACTCCGCCCCTCTCAGTGATGTCAGCAGCTCCATTGTCTGTCAGTGCATCACTGATAtctgcagtctcagcttgcatcatcaaggctgcgTCCAGATACTGTTGATCTTTGTGTGCGTTCTGGAATATTGTATTAAAAATGCTtcatggaaacaccaagatgcgcatCTGCTTTAAAATGAAGAGTCTGATGTGCACAACTCAAATACACTGTAGCTGTAAACTGAGCTGAGATCAGCTGGAGTGAGAATGTACGAGTGCTGAACACATGCTATAAACTCTctgaaaggtc

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0004222 metalloendopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008237 metallopeptidase activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-041014-209 Predicted to enable metalloendopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including epidermis; gill; heart; liver; and pleuroperitoneal region. Orthologous to human MEP1B (meprin A subunit beta).

Ensembl:

ensembl_id ENSDART00000082091

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033748 lncRNA downstream 2334 281033 ~ 281430 (-) True XLOC_016043
TCONS_00033339 lncRNA downstream 22598 260035 ~ 261166 (-) True XLOC_016042
TCONS_00033747 lncRNA downstream 31834 250492 ~ 251930 (-) True XLOC_016041
TCONS_00031720 lncRNA upstream 42059 335852 ~ 338458 (-) False XLOC_016045
TCONS_00033749 lncRNA upstream 42059 335852 ~ 344597 (-) False XLOC_016045
TCONS_00033750 lncRNA upstream 48685 342478 ~ 344588 (-) False XLOC_016045
TCONS_00031721 lncRNA upstream 48685 342478 ~ 344595 (-) False XLOC_016045
TCONS_00033751 lncRNA upstream 48685 342478 ~ 344759 (-) True XLOC_016045
TCONS_00031717 mRNA downstream 77608 198565 ~ 206156 (-) True XLOC_016040
TCONS_00031716 mRNA downstream 86099 194742 ~ 197665 (-) True XLOC_016039
TCONS_00031715 mRNA downstream 90057 187852 ~ 193707 (-) True XLOC_016038
TCONS_00031714 mRNA downstream 91809 184818 ~ 191955 (-) False XLOC_016038
TCONS_00031713 mRNA downstream 99713 176711 ~ 184051 (-) True XLOC_016037
TCONS_00031723 mRNA upstream 60631 354424 ~ 364839 (-) True XLOC_016047
TCONS_00031724 mRNA upstream 80572 374365 ~ 389867 (-) True XLOC_016048
TCONS_00031726 mRNA upstream 393080 686873 ~ 689047 (-) True XLOC_016053
TCONS_00031727 mRNA upstream 402451 696244 ~ 707152 (-) True XLOC_016054
TCONS_00031728 mRNA upstream 419287 713080 ~ 716426 (-) True XLOC_016055
TCONS_00031725 other upstream 289658 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031733 other upstream 588543 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031736 other upstream 656455 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031757 other upstream 2007565 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031768 other upstream 2832165 3125958 ~ 3126074 (-) True XLOC_016090

Expression Profile

//