RNA id: TCONS_00033748


Basic Information

Item Value
RNA id TCONS_00033748
length 398
lncRNA type antisense_over
GC content 0.43
exon number 1
gene id XLOC_016043
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 281033 ~ 281430 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taggctagttttgatcaacagatgtcgctctaggctagttttgatcaacagatgtcgctctaggctagttttgatcaacagatgtcgctctaggctagttttgaccaacagatgtcgctctaggctagttttgaccaACAGATATTGCTCTAGGTTCGATTTGACCAACatatgttgctctaggctagttttgaacaaatGGGCTCTAAGATAGCTTTGAACATCacatgtcgctctaggctagttttgaccaacaaatgttgctctaggctagttttgaccaACAGATgtggctctaggctagttttgaccaacagatgtcgctctaggctagttttgaccaacagatgtcgctctaggctagttttgaccaACAGATGTCGCTCTAGGTTAGATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033339 lncRNA downstream 19867 260035 ~ 261166 (-) True XLOC_016042
TCONS_00033747 lncRNA downstream 29103 250492 ~ 251930 (-) True XLOC_016041
TCONS_00031720 lncRNA upstream 54422 335852 ~ 338458 (-) False XLOC_016045
TCONS_00033749 lncRNA upstream 54422 335852 ~ 344597 (-) False XLOC_016045
TCONS_00033750 lncRNA upstream 61048 342478 ~ 344588 (-) False XLOC_016045
TCONS_00031721 lncRNA upstream 61048 342478 ~ 344595 (-) False XLOC_016045
TCONS_00033751 lncRNA upstream 61048 342478 ~ 344759 (-) True XLOC_016045
TCONS_00031717 mRNA downstream 74877 198565 ~ 206156 (-) True XLOC_016040
TCONS_00031716 mRNA downstream 83368 194742 ~ 197665 (-) True XLOC_016039
TCONS_00031715 mRNA downstream 87326 187852 ~ 193707 (-) True XLOC_016038
TCONS_00031714 mRNA downstream 89078 184818 ~ 191955 (-) False XLOC_016038
TCONS_00031713 mRNA downstream 96982 176711 ~ 184051 (-) True XLOC_016037
TCONS_00031718 mRNA upstream 2334 283764 ~ 293793 (-) False XLOC_016044
TCONS_00031719 mRNA upstream 2753 284183 ~ 293036 (-) True XLOC_016044
TCONS_00031723 mRNA upstream 72994 354424 ~ 364839 (-) True XLOC_016047
TCONS_00031724 mRNA upstream 92935 374365 ~ 389867 (-) True XLOC_016048
TCONS_00031726 mRNA upstream 405443 686873 ~ 689047 (-) True XLOC_016053
TCONS_00031725 other upstream 302021 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031733 other upstream 600906 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031736 other upstream 668818 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031757 other upstream 2019928 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031768 other upstream 2844528 3125958 ~ 3126074 (-) True XLOC_016090