RNA id: TCONS_00033339


Basic Information

Item Value
RNA id TCONS_00033339
length 1096
lncRNA type intronic
GC content 0.37
exon number 2
gene id XLOC_016042
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 260035 ~ 261166 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

taagctaaaaagaaaatgaatgaatgaatgaatgaatgaagactttACAGTGTTATTTGACTTTTTCTTAGTCAGTCCCTGAAGACTGTTTGACTCTCCTGATGCCATAAAGCTCGTTTATTTCACTGTGTTGTGCTTTGCTCTGTTGTAATTCTGCCTGCtgtaatttagttatttatttatttattttattattatttttttaaagatttatttttggccttttttgcctttattagacaggacagtatttagacaggaagcgaagttgtagagagagagagaggggttagGGTAGGTAAATGTCCTCGAGCTGGGATTCGATCTCGGGACGCCTTGACACGCTCCTGCATCATATGTCgacacgctaaccactaggctattgcgtcgacttagttttcatttttatgcatGATTTACACCCTTACAAAATCCCCACAATCAATCCAAATTCAAGACTTTTCCCCCAAATAGAGCTCTTCAGGCCATGTGGTGAACtgggcatgggatgataaccgggtATACTGCGGttaggaaaagtcaaggttttaaaagcaTCAACATTTTCTGCGATACCGTTCATAATGTATGTGTAGAATTTCTTATTTATGTTTTTAGGACAGCAGAAAACACattcaaagatgccattttacATAAAGAAATCAGAGTTTTAGatttaatgaagacagcagaggtcaatcattcatttgagttatttagcctgacgtgttcactgctccaaaatattagaaatgtttctcaaaataaaatatgctgtGTTCAGAAGAGTAAAAAGTTTGTGTTTTTATGCAGAcacttaaaaagaaaatatctgtACAGCGAAACCACGATAATTTTATCCTGGGTCATCAAACCGTCAGAATCTAACACCAGCCCATGCCAAGGTGAAACTGGAATATAcatcactgaaaaacaaaatattgcaatgccatGTCATGCAGCCCGGTCCAACccagCACCGCATCAGTGTGATCAGGTGTGTGATGGACCCTTTCCACATCAGTGTTCTGACACGTTCAACACTCATCAGCATCTTCAACTCTTGAAAGTGTTAGatattcagatttttaaataa

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00033747 lncRNA downstream 8105 250492 ~ 251930 (-) True XLOC_016041
TCONS_00033748 lncRNA upstream 19867 281033 ~ 281430 (-) True XLOC_016043
TCONS_00031720 lncRNA upstream 74686 335852 ~ 338458 (-) False XLOC_016045
TCONS_00033749 lncRNA upstream 74686 335852 ~ 344597 (-) False XLOC_016045
TCONS_00033750 lncRNA upstream 81312 342478 ~ 344588 (-) False XLOC_016045
TCONS_00031721 lncRNA upstream 81312 342478 ~ 344595 (-) False XLOC_016045
TCONS_00031717 mRNA downstream 53879 198565 ~ 206156 (-) True XLOC_016040
TCONS_00031716 mRNA downstream 62370 194742 ~ 197665 (-) True XLOC_016039
TCONS_00031715 mRNA downstream 66328 187852 ~ 193707 (-) True XLOC_016038
TCONS_00031714 mRNA downstream 68080 184818 ~ 191955 (-) False XLOC_016038
TCONS_00031713 mRNA downstream 75984 176711 ~ 184051 (-) True XLOC_016037
TCONS_00031718 mRNA upstream 22598 283764 ~ 293793 (-) False XLOC_016044
TCONS_00031719 mRNA upstream 23017 284183 ~ 293036 (-) True XLOC_016044
TCONS_00031723 mRNA upstream 93258 354424 ~ 364839 (-) True XLOC_016047
TCONS_00031724 mRNA upstream 113199 374365 ~ 389867 (-) True XLOC_016048
TCONS_00031726 mRNA upstream 425707 686873 ~ 689047 (-) True XLOC_016053
TCONS_00031725 other upstream 322285 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031733 other upstream 621170 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031736 other upstream 689082 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031757 other upstream 2040192 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031768 other upstream 2864792 3125958 ~ 3126074 (-) True XLOC_016090

Expression Profile

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