RNA id: TCONS_00033751


Basic Information

Item Value
RNA id TCONS_00033751
length 1219
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id XLOC_016045
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 335852 ~ 344759 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TGATGGAGTTGTGTTTTTCAGCAGACACACATACAGTAATTTTTGGAAAGTATTTTCTGGGGAAGGGATCATTGGGCAGACACGTCTTTACATGCATTTTCAGTTCCCCTTACATGCAAATCTCATTCAGGTCATCCAGATAAATACTCCACGAGATTGGAGAAGACTTCCAAACCAGCTCAGCCATTCAAACAGACCACTTACAGCTCCTGAACAAACCATGAGTTCTGACGACGAAAAAGTATTTGACACTTGCATGAAAATATGGCGTGTGAAGAGCAAAcgcaaaaaaaaacaagcctCTGATAACTTCTTAGGCAAAGTTGCAAACATAGCAAGTGCAGCCACTGAAAACAATAAAGAGAAACTCCAGGAAGCAGTCCTCAAAAAAGGTGGCCGTTACCTTTTTCGCCGTTGGTTTGGCAGCAATGACGAATAACTGGAGGAGCTGAGCAGACGCTGAGCAGGAGGATCCCGAGCTGATCAATCTGTGCTGAGTAAAGGGTTTCTGGACACAACACAACAGCTAAGATGAGTTCAGCTCCTGTCAGGAACACTATAAGCAGACGTCATCATGACGACCATCACAACTGTACAGAACAACACAGCTTCAGCCGTCTTCTAGAATGCGTCTATATAATAtatgaagtcagagttattctccccctgtatattttaccccagtttctgtgtaacagagagcagatttctccacacatctctaatcataacaTAACTCAACATAactctgacttcatctgtatatatttattccTCTGCAATGCTTTCTAGTTTATGAACATCCTTCATTTAATATGTCTGATATTTGCTGTGACGGATGATGCAACACTCCTTTATGCATTAATTTCTATTATTCTAAATGGATTAATCTTTTGAATCTCTCTTGTACTTTTTATTGATTGTTGATTTTGAATAAATGTTCTATTGGTGTTTTGCCTTTAGTCAAaccttttaacttgtatttaatgtctacaatgcaaatccagtcAGATCCTCTTTatctggtaaacaaagcaagtgtctgatataatatctctactgaaAGACAGAATATATGACTGCACacactgtattgtacataaaccaGATGAACATTtacacattagtcaataatattactgtaattaatgtaaaaactgaataaatatagatgtacacacatttacacacgtcAATAAACTGAATCAATGATGAGCTC

Function

GO:

id name namespace
GO:0016056 rhodopsin mediated signaling pathway biological_process
GO:0050877 nervous system process biological_process
GO:0048488 synaptic vesicle endocytosis biological_process
GO:0009581 detection of external stimulus biological_process
GO:0009582 detection of abiotic stimulus biological_process
GO:0009583 detection of light stimulus biological_process
GO:0009584 detection of visible light biological_process
GO:0009314 response to radiation biological_process
GO:0036368 cone photoresponse recovery biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0050953 sensory perception of light stimulus biological_process
GO:0009628 response to abiotic stimulus biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0104004 cellular response to environmental stimulus biological_process
GO:0007600 sensory perception biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0007603 phototransduction, visible light biological_process
GO:0099504 synaptic vesicle cycle biological_process
GO:0009416 response to light stimulus biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0036465 synaptic vesicle recycling biological_process
GO:0015696 ammonium transport biological_process
GO:0003008 system process biological_process
GO:0051606 detection of stimulus biological_process
GO:0071214 cellular response to abiotic stimulus biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0006811 ion transport biological_process
GO:0071478 cellular response to radiation biological_process
GO:0071482 cellular response to light stimulus biological_process
GO:0140238 presynaptic endocytosis biological_process
GO:0097272 ammonium homeostasis biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0030672 synaptic vesicle membrane cellular_component
GO:0097060 synaptic membrane cellular_component
GO:0042995 cell projection cellular_component
GO:0044425 obsolete membrane part cellular_component
GO:0001750 photoreceptor outer segment cellular_component
GO:0043005 neuron projection cellular_component
GO:0044441 obsolete ciliary part cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0044456 obsolete synapse part cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0005834 heterotrimeric G-protein complex cellular_component
GO:0120025 plasma membrane bounded cell projection cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0045211 postsynaptic membrane cellular_component
GO:1905360 GTPase complex cellular_component
GO:0099501 exocytic vesicle membrane cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0097730 non-motile cilium cellular_component
GO:0097731 9+0 non-motile cilium cellular_component
GO:0097733 photoreceptor cell cilium cellular_component
GO:0098794 postsynapse cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0019905 syntaxin binding molecular_function
GO:0008020 G protein-coupled photoreceptor activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0050254 rhodopsin kinase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031720 lncRNA downstream 4020 335852 ~ 338458 (-) False XLOC_016045
TCONS_00033748 lncRNA downstream 61048 281033 ~ 281430 (-) True XLOC_016043
TCONS_00033339 lncRNA downstream 81312 260035 ~ 261166 (-) True XLOC_016042
TCONS_00033747 lncRNA downstream 90548 250492 ~ 251930 (-) True XLOC_016041
TCONS_00031722 lncRNA upstream 7338 352097 ~ 352779 (-) True XLOC_016046
TCONS_00033752 lncRNA upstream 60571 405330 ~ 458889 (-) False XLOC_016049
TCONS_00033753 lncRNA upstream 61127 405886 ~ 458907 (-) False XLOC_016049
TCONS_00033754 lncRNA upstream 61127 405886 ~ 458911 (-) True XLOC_016049
TCONS_00033340 lncRNA upstream 148164 492923 ~ 495440 (-) False XLOC_016050
TCONS_00031718 mRNA downstream 48685 283764 ~ 293793 (-) False XLOC_016044
TCONS_00031719 mRNA downstream 49442 284183 ~ 293036 (-) True XLOC_016044
TCONS_00031717 mRNA downstream 136322 198565 ~ 206156 (-) True XLOC_016040
TCONS_00031716 mRNA downstream 144813 194742 ~ 197665 (-) True XLOC_016039
TCONS_00031715 mRNA downstream 148771 187852 ~ 193707 (-) True XLOC_016038
TCONS_00031723 mRNA upstream 9665 354424 ~ 364839 (-) True XLOC_016047
TCONS_00031724 mRNA upstream 29606 374365 ~ 389867 (-) True XLOC_016048
TCONS_00031726 mRNA upstream 342114 686873 ~ 689047 (-) True XLOC_016053
TCONS_00031727 mRNA upstream 351485 696244 ~ 707152 (-) True XLOC_016054
TCONS_00031728 mRNA upstream 368321 713080 ~ 716426 (-) True XLOC_016055
TCONS_00031725 other upstream 238692 583451 ~ 583567 (-) True XLOC_016052
TCONS_00031733 other upstream 537577 882336 ~ 897919 (-) False XLOC_016060
TCONS_00031736 other upstream 605489 950248 ~ 956225 (-) True XLOC_016062
TCONS_00031757 other upstream 1956599 2301358 ~ 2301434 (-) True XLOC_016081
TCONS_00031768 other upstream 2781199 3125958 ~ 3126074 (-) True XLOC_016090

Expression Profile

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