RNA id: XM_021605271.2


Basic Information

Item Value
RNA id XM_021605271.2
length 4089
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC110525275
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 12250481 ~ 12257863 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ctgtaaagtttggtggaggataaaTAATGGTCTGGTGAAATCTTAATGTTacaacacaatgacattctagaagactctgcttccaactttgtggcaacagtttggggaaggtcctttcctgtttctgcatgacaatgccccttgcacaaagcaaggtccatacagaaatgtttttttgagattggtgtggagAACTAGACTTgccttcacagagccctgacctcaaccccatcgaacacttcTGGGTTGAATTGGAACATCGACTGCAAGCCAGGTATAATCGCCCAACCTTATTAATGCTCTTATGGCttatggaagcaagtccccacagaaatgttccaacatctagtggaaagccttcccagaagagtggaggcttttcTAGCAGCAAAGGCGGGACCAACTCCATTCCAATGCccatgagatgttcgacgagcaggtgtccacatacttgtgggCATGTAGTGTATGTAATCATGGCTGCAGCTGAATGAATGTAcgagtgttcagaaacatctaaCGAAATTATTTAGGCTACAATATGTTGAAATATTAATAGGTAAAGAAAATAACGCTATCCGTGCACTGTTATCCATTATGACGTTTGCAGATATTTTTCGAATCAGCAAGATTAGGACACCAGGAAATAAAATATGACATTACGAGATTCGCCTATGCAAACAGTCTGTTCTTTGCCCGCGTGGTCAGACATAGGTCTGTCACCACCGCGAGAGCAAAAAGATGGCTAATACTGTGGATGAGGACGAGCAACAACCATTCCCTGCTGAATGTAAGATCATCAGAGTTACTGTGAAAACACCAAAGGAAAAAGAGGAAATCGCCATTCCAGAGAACAGCTCCATCAAACAGTTTAAGGAGCAGATAGCCCAGCGGTTCCAGGCACAAACAGAGCAGCTGGTACTCATCTTCGCTGGGAAGATCCTCAAAGATGCAGATCTGCTGAGTCATCAAGGCATCCACAATGGACTGACCGTCCACCTGGTCATCAAGACCCtgagcagGCCTCCGGAGTTGTGTGCCTCTCCTTCCAACACCACTGCCTCAGAACAGGCCCAACCAGAAGGCCCTACCTCTGTCCCTGGACCCCCTCCTGTAGAACCTACCTCTGTCCCTCGACCCTCTCCTGCTTCTTCAGCCACCCCTACCTTCAGCCTTGGTCTAGGCAGTCCAGGGACAGCTGCTGCGGGGCCTGGTCTCGCTGAGCTGCAGAGGCAGCTGATGTCCAACCCTGAGCTGCTGGCCCAGATTATGGACAGTCCCTTGGTCCAGGGCATGCTGTCCAACCCAGACATGATGAGACAGCTCATCATGGCCAACCCCCAGATGCAGCTGCTACTGCAGCACAACCCCAACATCACCCACCTGTTCAACAACCCTGACGTCATGAGAcagACCCTGGAGATAGCACGGAACCCAACCATGATGCAGGAGATGTTGCGCAACCAGGACAGGACACTAAGCAACAATGCCCTCCGCAGGATGTCCACTGATGCTCAGGGACCCATGCTGAATGCTGCTGCTCAGGAAccgATTGCAGGAAACCCTTTTGCTTCTCTGACGACCTCGTCATCAGTGGAAATCCAGTCACCCCGGGTGGAAAATGGAGACCCCCTCGCCAACCCCTGGGTTCCCCCTGCTTCCACAGACACCGCCACACCCACCACTACCCCCACCCTGTCCAGCAATGGCCCTCAGACCACCCTGCACAACCTAGGTCCCGCCATGGGAGCAGCTATGGCCAATAGTCCGGGAATGCAGAGTCTTCTGCAGCAGATCACGGAGAACCCCACACTGATGCATAACATGCTGTCAGCCCCCTACATGAGGAGCCTACTCAACAGCCTGAGCCAGAACCCTGACCTAGcagcacagATGATGCTGAACAACCCACTGTTTTCTGGGAACCCTCAACTGCAGCAGCAAATGAGACAACAACTCCCTATGTTCCTCCAACAGATGCAGAACCCTGAGATGCTGTCGGCCATGTCCAACCCCAGGGCCATGCAGGCACTGCTGCAGATCCAACAGGGACTGCAGACCCTTGCCACTGAGGCACCTGGATTCATACCAGGGGTTGGACTGGGAGGCGCCGGCTCAGATCTTAACCCTGCCCCTGGATTGTCATCAGACCCCGCCCCTAGTGACCTGAGCAGTGGGTCCCAGGTAGTCCCGGAAACGGGTCAgcggcaacaacaacaacagtttgTGCGTCAGATGCTAGACGCTCTCGCTAGCACCAATCAGCAGGCTCAGACTGAAGAGCTGCTGTTCCAGGAGCAGGTGGAGCAGCTGACGACCATGGGCTTCCTCAACCCAGAGGCCAACCTGCAGGCCCTCATCGCTACCGGGGGAGACGTCAACGCCGCTGTAGAACGACTGCTGGACTCGCCACCcttgtaatacacacacacttcacatgtGCACATACAATTAACAAATTCACGTGCGCACACTCACTTGTACAATCACGCAGTTGTACGATCAGATGCTTGCACATTCTTCACTCACAGAGAACTAGTGAAACATGCACTCCTGAATGCCATTTATATTGTATATGTAAGCTGCTGAACTGTGAAGTGCAGGCCTGTCTGTGCTGTATGTTCTGAATGGCCTTAGTTGGTTCAGGCTCTAATCAGGATCATGCTGGCTTCTGCCACATTCCTTTATGCAGAGTCCCATCCTACCTAAGAGTCCCATCCTACCTAAGAGTCCCATCCTACCTAAGAGTCCCATCCTACCTAAGAGTCCCATCCTACCTAAGAGTCCCATCCTACCTAAGAGTCCCATCCAAGACTCTTAAGAGTGAATATGCTGCTAGTCTCAATATGTATTTCCCTGCTGCTACCAAGGCCTTAAACTCAAATCAGGATAATAACCCAAGGGTTCCCTACTGGTGACCCTTGAGAGCATGTGTACAGCAgtctcagttgtgtgtgtgtatatatgtgtaatGTGAACAGACTGCATTCATAATGCACTAAATGCTATGTGTTCTTTTTACCACTTCATTGTGGTATAGACTAGGGGAGGCCAGTTTTGCCACTTCATTGTGGTATAGACTAGGGGAGGCCAGTTTTGCCACTTCATTGTGGTATAGACTAGGGGAGGCCAGTTTTGCCACTTCATTGTGGTATAGACTAGGGGAGGCCAGTTTTGCCACTTCATTGTGGTATAGACTAGGGGAGGCCAGTTTTGCCACTTCATTGTGGTATAGACTAGGGGAGGCCAGTTTTGCCACTTCATTGTGGTATAGACTGGAAGTGGGCTGCTCAATTGACTGTTACATGGAGCCGGCCTTTGCTGACAAGTTTCTTCAATAGCAGCCCCTCGTATCACGCTGCAGTATCACGCTTGCACAGCCTTGGATATGAGTGCAAGCTTGTAGCACTGATATTGATGTAGCAGTGATGTCCAATCAAGAATAAGTGTGCCGGTGGCTTTAGATGTATTCCCATTTGATAATACAATGACTCACTATGTAGCTCTATTTACCTCTATGTAGCTCTGTGCATTTTATTAACTCTTACAAAATGTACTTTTGACTTGTGTGTTATTATAGGCTATGTTGTTTTATTGTCTAAAGTTCAAACCCTCATAGTATGTTCTTTATGCTCCTACGGTTAGGCTTATATATGGAGGATGAAGTGTTTTTCTTTCTAAACCCCATGTTTCATATTTTTCATGTCTTTAATGTATTAATTGTACTGCACCACTGAAACTGGCTAGTGTAACAAAAACCATGTGCTCTGTCCCACTGGAGGGTACTGTTGACTCAACTCTTCTGCCTCCTTGAGAGAAAATATACAATTCAGGAGCCATTGAAGTACTGTACATGCAAAAAAAACGGGAGCAGGAATGGAATCTTAATAATATACCTGAATGAATAGAGTAGAATCTTTTAGAGTGCTCAGCAAAGCAATTACTGAAGTCACTTTCTTAGCACATTGCCAGTATGGTGATGATACCAACTGCCTTGGAAAATTGTAGCCTTCATCTTTTTGATTTCAGCATTTAATTTGTATTCATTCTCCTGTGTGCTGGTTAAtaaagtgaaatggaaaaaaacAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU539631 lncRNA downstream 117852 12132354 ~ 12132629 (-) True G474649
TU539628 lncRNA downstream 127007 12122622 ~ 12123474 (-) True G474646
TU539619 lncRNA downstream 153649 12096484 ~ 12096832 (-) True G474641
TU539605 lncRNA downstream 192002 12058042 ~ 12058479 (-) True G474627
TU539587 lncRNA downstream 230531 12019722 ~ 12019950 (-) True G474609
TU539648 lncRNA upstream 23776 12281639 ~ 12282596 (-) True G474664
TU539713 lncRNA upstream 27232 12285095 ~ 12285402 (-) True G474722
TU539719 lncRNA upstream 47400 12305263 ~ 12305530 (-) True G474728
TU539722 lncRNA upstream 49290 12307153 ~ 12307428 (-) True G474731
TU539788 lncRNA upstream 135590 12393453 ~ 12394430 (-) False G474793
XM_036979418.1 mRNA downstream 6409 12164567 ~ 12244072 (-) True frmd3
XM_036979415.1 mRNA downstream 92880 12139618 ~ 12157601 (-) False LOC110525271
XR_005052018.1 mRNA downstream 92880 12139618 ~ 12157601 (-) False LOC110525271
XR_005052019.1 mRNA downstream 92880 12139618 ~ 12157601 (-) True LOC110525271
XM_036979417.1 mRNA downstream 111037 12105812 ~ 12139444 (-) True rasef
XM_021605276.2 mRNA upstream 752 12258615 ~ 12271556 (-) False gkap1
XM_021605277.2 mRNA upstream 1134 12258997 ~ 12271556 (-) False gkap1
XM_036979419.1 mRNA upstream 1136 12258999 ~ 12271296 (-) False gkap1
XM_021605278.2 mRNA upstream 1136 12258999 ~ 12271453 (-) False gkap1
XM_021605275.2 mRNA upstream 1137 12259000 ~ 12271556 (-) True gkap1
TU539592 other downstream 220871 12029159 ~ 12029610 (-) True G474614
TU539498 other downstream 293944 11955266 ~ 11956537 (-) True LOC110525267
TU538887 other downstream 507723 11742202 ~ 11742758 (-) True G474030
TU538785 other downstream 648484 11601515 ~ 11601997 (-) True G473930
TU538397 other downstream 866035 11379527 ~ 11384446 (-) True LOC110525252
TU539726 other upstream 166598 12424461 ~ 12425235 (-) True LOC110525279
TU540491 other upstream 694389 12952252 ~ 12954051 (-) True G475413
TU540518 other upstream 771522 13029385 ~ 13046261 (-) True LOC110525296
TU540658 other upstream 939452 13197315 ~ 13198012 (-) True G475573
TU541500 other upstream 1773552 14031415 ~ 14087681 (-) False fam172a

Expression Profile