RNA id: XM_021605276.2


Basic Information

Item Value
RNA id XM_021605276.2
length 1595
RNA type mRNA
GC content 0.48
exon number 12
gene id gkap1
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 12258615 ~ 12271556 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGAAGTCAACATATTATGAGCTGCTCCATATCGCATATTACCCCTTTTTTTTCTTGCAGAACACATTTTGAGCAACTGGGCCACCATAGGTACTTTAGCAACTGGAAGTGGTGAACGTGTGGTTAACTACTCGAACAGGTGAAAGTTGTGCACAGGTCAGCAGATGGCGTCAGCAATGATCTCCGTCCACACCACAGCCTCTCGCTTTGCCCTGCTCCAGGTCGACTCTGATTCCGACTCCGATTCAGAGTCAGGAAGGACTAAAGGCGCCCGGGACTCTGGAAAGACTCGGCCCGGGAAGACAACCAGTGGGAAATCCACTGCAAGCAACGACAAGAAGAAGGAAAAGCGTAAGAAGAAGAAAGAGCAGCAACAGAGCGAGGCCAATGAGTTAAGAAATCTTGCCTTTAAGAAGCTCCCTCAGAAGTCCTCTGCCCcgcccccctccctgtctctgcaGGGTGTGGCCAATGAGCTGCTCCATCCCGCAGCAGGGGACCAAGCCATGCCCCCGGAAGGCTGGCAGCAATGGAAGCAAAGGGACAACCAGTTGACGAGTGAGCTTTATGAGGCCGACCTGGAGAAGGCACTGATGATGAGTAAACTGGAGTTTGAGCAGCATAAACAGGATGATGATGGTACAGACACTCCCTCTCCCAAGTCCCGAGGAGCAGCAGTAGGGAAGAAGGACAAGAAGAAGAACCAGCAGGGAAAAGACAAGAAGATGACGGTCTCTCTGAAGGACTTCCAGGCGGAGGGGGATCAGAGTAAGAAGCaggagaaagagGAGCCCAAACCACCCGCACCTCCAGAAGACAAGTTCTTCAACAAGCTTGAGGATGACGTTAGCAAAATCGTACAGCAGGAAAAAAGACGTGAGCAGTTTTCTAACAGCACTGGCCTCGAGGTCACGACTTCAACAGAGCATGAACCGGACCCTCGAACTGAGCAGCTAAAGGACGATCTGGAGAAGAAAGACCAAGAAATTGACAAGTTAAAGAAGGTCATTTCACAATGGGAGGTGAAATACAAAGAAGTGAAAGCCAGAAACTCCCAGCTCCTGAAGATGCTGcagcagggagagaTGAAAGATAAAGCCGAGATCCTACTGCAGGTGGAAGAGCTTCTAAATATCAAAGAGGAGTTGTcttcacagGTGACATCACTACATGCCTCACTGGAACAAGAGAAGTCGAAAGTGAAAGGTTTACAAACAGATCAGCCAAAACACCATCAGGGAAACAGGAAGGGGAAAAAGGGTCCAGAGTCCGATCTATGAAGACCGCAGAAGGAAGAACATTGACTGCAAAAACAAACTAAGCCACTCCTATTCTTCAGGGTCTCCTTGTTTGTACTGTTATTCTCTACTGTCTTCATGCGTTATGCATGACTCGTATTACCACACACCAACTCCTGGATGTGTTGAACTGCAGAAGTCATGAAAAGGCTTTTAATAAACGCTCTGATAAAGATACATTTCAAGTTGACTGACGTCATCGCATTTTTTTTTCTGGTATGATGCCAAATGACAGgtgtgaaattagtttttttcccctttcaCTGCAAGGTAAATAAATGACTTTTCCAGTGTAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU539631 lncRNA downstream 125986 12132354 ~ 12132629 (-) True G474649
TU539628 lncRNA downstream 135141 12122622 ~ 12123474 (-) True G474646
TU539619 lncRNA downstream 161783 12096484 ~ 12096832 (-) True G474641
TU539605 lncRNA downstream 200136 12058042 ~ 12058479 (-) True G474627
TU539587 lncRNA downstream 238665 12019722 ~ 12019950 (-) True G474609
TU539648 lncRNA upstream 10083 12281639 ~ 12282596 (-) True G474664
TU539713 lncRNA upstream 13539 12285095 ~ 12285402 (-) True G474722
TU539719 lncRNA upstream 33707 12305263 ~ 12305530 (-) True G474728
TU539722 lncRNA upstream 35597 12307153 ~ 12307428 (-) True G474731
TU539788 lncRNA upstream 121897 12393453 ~ 12394430 (-) False G474793
XM_021605271.2 mRNA downstream 752 12250481 ~ 12257863 (-) False LOC110525275
XM_021605273.2 mRNA downstream 752 12250481 ~ 12257863 (-) True LOC110525275
XM_021605269.2 mRNA downstream 753 12250481 ~ 12257862 (-) False LOC110525275
XM_021605270.2 mRNA downstream 753 12250481 ~ 12257862 (-) False LOC110525275
XM_036979418.1 mRNA downstream 14543 12164567 ~ 12244072 (-) True frmd3
XM_036979421.1 mRNA upstream 38623 12310179 ~ 12555360 (-) False LOC110525279
XM_021605289.2 mRNA upstream 317504 12589060 ~ 12623505 (-) False rtkn
XM_021605287.2 mRNA upstream 317504 12589060 ~ 12650568 (-) False rtkn
XM_021605288.2 mRNA upstream 317504 12589060 ~ 12650573 (-) False rtkn
XM_021605283.2 mRNA upstream 317504 12589060 ~ 12703820 (-) False rtkn
TU539592 other downstream 229005 12029159 ~ 12029610 (-) True G474614
TU539498 other downstream 302078 11955266 ~ 11956537 (-) True LOC110525267
TU538887 other downstream 515857 11742202 ~ 11742758 (-) True G474030
TU538785 other downstream 656618 11601515 ~ 11601997 (-) True G473930
TU538397 other downstream 874169 11379527 ~ 11384446 (-) True LOC110525252
TU539726 other upstream 152905 12424461 ~ 12425235 (-) True LOC110525279
TU540491 other upstream 680696 12952252 ~ 12954051 (-) True G475413
TU540518 other upstream 757829 13029385 ~ 13046261 (-) True LOC110525296
TU540658 other upstream 925759 13197315 ~ 13198012 (-) True G475573
TU541500 other upstream 1759859 14031415 ~ 14087681 (-) False fam172a

Expression Profile