RNA id: TCONS_00031979


Basic Information

Item Value
RNA id TCONS_00031979
length 1858
RNA type mRNA
GC content 0.42
exon number 6
gene id XLOC_016206
representative True

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 11483072 ~ 11504778 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttttacattgcatagttcagctttattttaaattaatcaattttgTCTTCGGTATGAAATGCATTATGGTCCTAACTCAGTGGCTGTGAGCTGTCGACTTTCAAATGTTTTGTATATATTAACAAGTAAGATTAATTATGACGCATTCTGTGGTTAAGTAGACGAAATAAACAGACGAAAAAGTTTATTCATACCACCAGATGTTACCACAGCAGGCAAATCGAGACTACTTACACAAACTTCTTGAAACTTCTTGAAACGTGTGTGCCGCTTAAAGAATATGTCTTTTAAATCAAAAAAGGTGCAAATTATACGTTGTATCTCACAGTTTAAAATAAGATTATGTCTATGAGACTGCTGTGTAGTCGAACAGCTCAAACAAGTCACGACAAAACGCCATAAATACTTTAGTAAATACTTGAACTCCCACAAGCCAATGCGTGGATTGCGCCGAGCCACGTGACAGCAGTGCTTCTCAGCCTTTCCCAGCCCTGTCAGTCCGTCCGTCCTTTCCCGTAGATCTAAAACACAGAATCAAGTAAACTCCAGTTAACCTGCACTACTGACTGGCGAAGTAGCTTGCCGTCCCTCTAGTAACGAGAAGCGGAGAAGGGAGAAGTAACGTCATTCACaaagtgcgcgcgcgcgcgttctCGTTGTATTTTTCTCATGTTAATGTGaagaacaaatatttatttaccaACCGCGACCTTCACGGGAACGACTCACCATTCGGGTCCTTTGTAACTTATCTCCTACAGAAAGGTAAGCCCTGTTAGCATTACAGTTTACTTTTATCTGTATAAGTTTTAACGTTGAAAAAAGCTGTTTTGTTTCTGACTACATTTCACTAGTTTCTTAAGTGTTTGTATTAGCTTGTCTTAACTCACTGTTCTGTGTGTCATGTTGTTGATAAGGTTACCTGCACACCTCAAAATGAACATTCTCTTGGAGACTCTTAGACTGATATTTTTGACAGTCTACTACAACCTGGAAGCATTCCTAAAGTTCTTCATCCCCCTGAGGAAGAAAGATGTGTCTGGAGAGATTGTGCTCATCACCGGGTCAGGCAGTGGGATTGGCAGACTGATGGCCCTTGAGTTTGCCTCACTGGACGTCTCACTGGTGCTGTGGGACATTAATGTGGACGGCTTGAAAGAAACTGCAGAACAGGTTAAAGAAAAAGGGGCATCAAGGGTACATTATTACCAGTGTGACTGCAGTGATAGAGAAGCAGTGTATCGAGTGGCAGATCAGgTAAAAAGTGAAATTGGTGATGTCACCATATTAATAAACAATGCTGGCATTGTTAGTGGTAAGAAGTTCATGGACACCCCTGATGCCCTCATTGAGAAGACACTGAGAGTGAATGCAATGTCCCATTTTTGGACATACAAAGCATTTCTTCCCGCCATGATGGACAAAAACCATGGACATCTGGTCAGTGTTGCAAGCTCTGCTGGCTTGATAGGTGTCAATGGATTGGCAGATTATTGCGCAAGCAAGTTTGCTGCTGTGGGTTTTGCCGAGTCAGTGGCCCTTGAGCTGTTATCAGCAGGGAAGGATGGAATCAAGACCACGATTGTCTGCCCATTCTTGATCAACACAGGACTGTTTGATGGATGTGGGACAAAGTGGCCTCTACTGATGCCGATGTTGGAGCCTGACTATGTTGCTAAGAGGATTGTCAGTGCCATTCTGACCGACCAAGTTTTCGTTTTACTGCCAAGGTCCTTATACTTCTTAATGGCTTTAAAAGGTGTCATCCCATACAAACAATCAGTCATCCTGGGTATGTACTTCGGGGCCTTCAACTTCATGGACGCTTTCAAAGGAAGGGAAAAGAAGAGAGACTAA

Function

GO:

id name namespace
GO:0005811 lipid droplet cellular_component
GO:0016491 oxidoreductase activity molecular_function
GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2049 Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to be active in lipid droplet. Orthologous to human SDR16C5 (short chain dehydrogenase/reductase family 16C member 5).

Ensembl:

ensembl_id ENSDART00000186556

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00031977 lncRNA downstream 145193 11337040 ~ 11337983 (-) True XLOC_016205
TCONS_00031976 lncRNA downstream 151860 11330724 ~ 11331316 (-) True XLOC_016204
TCONS_00031975 lncRNA downstream 224798 11251097 ~ 11258378 (-) True XLOC_016203
TCONS_00031964 lncRNA downstream 455985 10956221 ~ 11027191 (-) True XLOC_016200
TCONS_00031950 lncRNA downstream 850799 10622235 ~ 10632377 (-) True XLOC_016194
TCONS_00033779 lncRNA upstream 52197 11556975 ~ 11558124 (-) True XLOC_016208
TCONS_00031984 lncRNA upstream 256048 11760826 ~ 11767204 (-) True XLOC_016211
TCONS_00031986 lncRNA upstream 471483 11976261 ~ 11981305 (-) False XLOC_016213
TCONS_00033352 lncRNA upstream 472258 11977036 ~ 11978594 (-) True XLOC_016213
TCONS_00033780 lncRNA upstream 1199179 12703957 ~ 12704384 (-) True XLOC_016218
TCONS_00031972 mRNA downstream 14522 11216814 ~ 11468654 (-) False XLOC_016203
TCONS_00031974 mRNA downstream 224629 11216958 ~ 11258547 (-) False XLOC_016203
TCONS_00031973 mRNA downstream 224629 11216958 ~ 11258547 (-) False XLOC_016203
TCONS_00031968 mRNA downstream 362956 11100613 ~ 11120220 (-) False XLOC_016202
TCONS_00031980 mRNA upstream 3913 11508691 ~ 11512819 (-) True XLOC_016207
TCONS_00031981 mRNA upstream 128475 11633253 ~ 11648731 (-) True XLOC_016209
TCONS_00031982 mRNA upstream 146398 11651176 ~ 11662851 (-) False XLOC_016210
TCONS_00031985 mRNA upstream 343732 11848510 ~ 11912347 (-) True XLOC_016212
TCONS_00031987 mRNA upstream 514563 12019341 ~ 12079718 (-) False XLOC_016214
TCONS_00031958 other downstream 577997 10905062 ~ 10905179 (-) True XLOC_016199
TCONS_00031915 other downstream 1735745 9747302 ~ 9747431 (-) True XLOC_016178
TCONS_00031914 other downstream 1736183 9746858 ~ 9746993 (-) False XLOC_016178
TCONS_00031909 other downstream 1794991 9688055 ~ 9688185 (-) True XLOC_016176
TCONS_00031903 other downstream 1939015 9529488 ~ 9544161 (-) False XLOC_016171
TCONS_00031983 other upstream 151775 11656553 ~ 11662923 (-) True XLOC_016210
TCONS_00031991 other upstream 719645 12224423 ~ 12224539 (-) True XLOC_016216
TCONS_00031998 other upstream 1747374 13252152 ~ 13254797 (-) True XLOC_016221
TCONS_00032033 other upstream 3489615 14994393 ~ 14994490 (-) True XLOC_016250
TCONS_00032037 other upstream 3523868 15028646 ~ 15033121 (-) True XLOC_016251

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000004_02955707_02959931.mRNA True 1001 mRNA 0.43 5 CI01000004 2955530 ~ 2959931 (+)