RNA id: XM_036979615.1


Basic Information

Item Value
RNA id XM_036979615.1
length 1994
RNA type mRNA
GC content 0.46
exon number 10
gene id LOC110525497
representative False

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 22572786 ~ 22579398 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACCTTTTAGGCATCTGCAGGTGTGATACACCCTGAAAATCTTGTCCAACCCGTTTACTGTGGTACTACTCTCGGCTGGAGAAAGAATATTGTTGGTACAGCCAGGCATCCAAAGATACAGGACAACGTCAGGAAACCAGGTTAAGatggaGAAGAGGAACGTTCAGCGTTGCTCTGGGACAACAAGGCGGAGGCGGTGGTGGGGTCTGAGGAGGCGCTGGAGAATGTTAGGCCTGTTTGAAATCAACCAGGAACATGAGTTCTACAGCTTCACCTGTCTTATGAAAGAGGGGCTGCATGCTGCCCTACAGACCACCATCGACACACCAGGACCTGATGAACTTTCTGCTGAACATTACAAATCGGAGCAGACTCAAGTCCACAAGGACTACGAGATGCAGACATTTGCAGGACTGGTGTTTTCCAGCTTGCGGTACTCCCTGGACATAAATGAGGAGGAGTACAAGAGATCCCTCTCTTCAGACTGCTGCTATCTACAGTTCACGAGCAACTCCAAGAGCAAAGCTGACTTCTTCCTCACGAATGACAAGAGGTTCTTCCTAAAGACACAGAATAAGCAGGAGGTGAAGTTTCTTCTTTCCAACCTGATGGCATATATGGATCACTTGGAGAAATACCCCCACTCGTTGTTGGTCAGGTTCCTGGGTCTCCATAGTATCCAGGTACCAAATGAAACAAAGGTGATTATAATGAAGTACACATTCAAACacagctataaaaaaaaaaaaaaactatttaactcTTTTCTTAATCTTTCTCAGAAGTATTTCATTGTGATGCAGAGTGTGTTTTACCCGGACGAGAGGATTGATACAAGATATGACATTAAGGGCTGTGAGGTGGGTAGGTGGACTGACCCTGCATCTACTGGAAGCCCAGTTAAGATTCTGAAGGATAACAACTTTGAAGGAAAGCACATCATTCTGGATCAGAAGAGCTCCTGGCTTGTGGATCAGGTTGAAATAGACACAGCTTTCCTCCGTAGCCTCAATGTGCTTGACTACAGCATTCTGCTGGCCCATCAACCCTTGCACAAAGATGAGCTGGACGGGAAGCACTCCTTTAGTAACCTTATTGTGCGCACTGAAAAGTCCATGGCCCAAGACAGTCCCACAGAGGAAGATCATCCCACTATTCCATTGTTGGGGGGAGACTCTTTTCGACTGGCATCAGATACAATAGACAGTGGGCCAGACCATGTCCAGGACACAGGGGAGCACTCTGGCCATTCAATCCACTGCCAGGAGATAAACCTGCCCTCTGTAAACAGTACAGATGCAGAACTCCATGAGTTCCATGCTCATCACCGTAGGCTGCTGCCTAATTTCAAGAACTCTGTGCATGTCATAGATGGGCCAGAGCTGCGCTACTTTGTGGGTATTGTAGACATTTTTACTGTGTACGGTTTGAAGAAAAGGCTGGAGAACCTGTGGAAGAGTCTGCGCTTCCCTGGCAGAGCCTTCTCCACTGTCAGCCCAGCTACCTACTCCCAGAGGTTCTGCCGGTGGGTAAAGGACCACACCAAGTAAAACGGGGACACTGTCTCTAGAAATGCATCTAGCCATCTATCTAGATAATCTGGGCATTTTTTCCCCCGTTTTTGTAGGTAACAGTATGAACAATAGGTGGCACCACAGCTTCTGTTGTAGTGGTGGTAGCCTATTTCAAAATACAGATACAACACACACaatttaattaagcaataaggcatgaggggttgtggtgtatatgaccaatataccgcGGCTATGGGCTGTTTTTAGTCACGActcaacgcggagtgcctggatacagctcttatattggccatataccacaagcccccagggtgccttattgctatttgaaactggttaccaacgtaattagagcagtaaaaagacAACTGTTGTCATACCCATTGTATGTCAGCCAATCATTATACAGGGCTCAAACCATCCAGTTTATACTTGTTATTAAATTTGTTCATATTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU553008 lncRNA downstream 29150 22543363 ~ 22543636 (-) True G486575
TU553006 lncRNA downstream 31975 22540602 ~ 22540811 (-) True G486573
TU552379 lncRNA downstream 42953 22528485 ~ 22529833 (-) True G486037
TU552358 lncRNA downstream 58102 22514437 ~ 22514684 (-) True G486024
TU552300 lncRNA downstream 145658 22424226 ~ 22427128 (-) True G485969
TU553019 lncRNA upstream 602 22580000 ~ 22580206 (-) True G486586
TU553027 lncRNA upstream 8576 22587974 ~ 22588195 (-) True G486594
TU553045 lncRNA upstream 35701 22615099 ~ 22615377 (-) True G486612
TU553065 lncRNA upstream 57356 22636754 ~ 22636967 (-) True G486623
TU552991 lncRNA upstream 63397 22642795 ~ 22644593 (-) False LOC110525506
XM_021605643.2 mRNA downstream 225 22550214 ~ 22572561 (-) True LOC110525498
XM_021605647.2 mRNA downstream 228 22550214 ~ 22572558 (-) False LOC110525498
XM_021605645.2 mRNA downstream 229 22550214 ~ 22572557 (-) False LOC110525498
XM_021605646.2 mRNA downstream 232 22550214 ~ 22572554 (-) False LOC110525498
XM_021605652.2 mRNA upstream 14111 22593509 ~ 22612376 (-) False LOC110525500
XM_021605655.2 mRNA upstream 14111 22593509 ~ 22612378 (-) False LOC110525500
XM_036979627.1 mRNA upstream 14111 22593509 ~ 22617558 (-) False LOC110525500
XM_021605653.2 mRNA upstream 14111 22593509 ~ 22617566 (-) True LOC110525500
XM_021605656.2 mRNA upstream 48557 22627955 ~ 22636391 (-) False LOC110525501
TU552199 other downstream 291760 22280726 ~ 22281026 (-) True G485877
TU552186 other downstream 309433 22260634 ~ 22263353 (-) True G485864
TU551550 other downstream 738426 21833548 ~ 21834360 (-) True G485279
TU551114 other downstream 1138067 21431930 ~ 21434719 (-) True G484895
TU551014 other downstream 1274613 21296580 ~ 21298173 (-) True G484807
TU553165 other upstream 258255 22837653 ~ 22840566 (-) True G486716
TU553428 other upstream 671888 23251286 ~ 23253361 (-) False G486953
TU553500 other upstream 806136 23385534 ~ 23385907 (-) True G487022
TU553494 other upstream 810619 23390017 ~ 23392062 (-) True G487016
TU554033 other upstream 1003638 23583036 ~ 23585554 (-) False LOC110525180